Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC17.11■□□□□ 0.33
ZNRF3Q9ULT6 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ZNRF3Q9ULT6 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNRF3Q9ULT6 AC132872.4-202ENST00000622924 2756 ntBASIC17.11■□□□□ 0.33
ZNRF3Q9ULT6 TBC1D27-202ENST00000424239 1573 ntBASIC17.11■□□□□ 0.33
ZNRF3Q9ULT6 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ZNRF3Q9ULT6 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AC068587.6-202ENST00000641839 5619 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AMT-256ENST00000638063 1783 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AC092570.1-201ENST00000414446 469 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AL080243.1-201ENST00000423293 1060 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 RN7SL147P-201ENST00000487345 298 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AC093300.1-201ENST00000510368 1201 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AL512310.5-201ENST00000551999 515 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 AC007952.5-201ENST00000572818 1486 ntBASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ZNRF3Q9ULT6 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AL109954.1-202ENST00000564051 2148 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 OR2W2P-201ENST00000406313 909 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 RPL3P2-204ENST00000413027 1203 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC023906.1-201ENST00000486386 453 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC087203.1-201ENST00000532111 1181 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC132825.4-202ENST00000578792 434 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AL136982.5-201ENST00000605222 294 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC073869.4-201ENST00000620841 800 ntBASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.09■□□□□ 0.33
ZNRF3Q9ULT6 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms