Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 HADH-202ENST00000403312 1752 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 SRC-202ENST00000373558 4304 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 HLA-V-201ENST00000429037 534 ntBASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CSF2RBP1-201ENST00000447905 391 ntBASIC15.01□□□□□ -0.01
PCDH9Q9HC56 KRT223P-202ENST00000449164 1292 ntBASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 C2orf69P2-201ENST00000562032 1123 ntBASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AC104506.1-201ENST00000609247 429 ntBASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 AGAP10P-201ENST00000454844 2418 ntBASIC15.01□□□□□ -0.01
PCDH9Q9HC56 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PCDH9Q9HC56 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 FAM90A12P-201ENST00000519497 2375 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 FAM90A24P-201ENST00000520792 2369 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15□□□□□ -0.01
PCDH9Q9HC56 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC15□□□□□ -0.01
PCDH9Q9HC56 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 AC099336.1-201ENST00000417053 1171 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15□□□□□ -0.01
PCDH9Q9HC56 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15□□□□□ -0.01
PCDH9Q9HC56 CNN2P10-201ENST00000443067 918 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15□□□□□ -0.01
PCDH9Q9HC56 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15□□□□□ -0.01
PCDH9Q9HC56 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
PCDH9Q9HC56 AC005586.2-201ENST00000563946 837 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
PCDH9Q9HC56 MIR4683-201ENST00000579659 81 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15□□□□□ -0.01
PCDH9Q9HC56 ZACNP1-201ENST00000612259 710 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC15□□□□□ -0.01
PCDH9Q9HC56 AC002472.3-201ENST00000640124 621 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15□□□□□ -0.01
PCDH9Q9HC56 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 KRT8P4-201ENST00000509735 1454 ntBASIC15□□□□□ -0.01
PCDH9Q9HC56 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15□□□□□ -0.01
PCDH9Q9HC56 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15□□□□□ -0.01
PCDH9Q9HC56 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PCDH9Q9HC56 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDH9Q9HC56 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms