Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM55Q9BYV6 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
TRIM55Q9BYV6 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
TRIM55Q9BYV6 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 AC036164.1-201ENST00000570544 333 ntBASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
TRIM55Q9BYV6 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 AC020658.7-201ENST00000624274 2442 ntBASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 BOLA2P3-201ENST00000404566 256 ntBASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 NOP2-211ENST00000540228 668 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 AC233724.13-201ENST00000598383 410 ntBASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 AC111170.3-201ENST00000624282 2464 ntBASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.76□□□□□ -0.05
TRIM55Q9BYV6 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 KRT43P-201ENST00000434019 910 ntBASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 SLC25A47P1-201ENST00000531577 414 ntBASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 MIR4525-201ENST00000580000 75 ntBASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 MIR4538-201ENST00000581377 78 ntBASIC14.75□□□□□ -0.05
TRIM55Q9BYV6 CU634019.7-201ENST00000624153 1185 ntBASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms