Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 AC007952.5-201ENST00000572818 1486 ntBASIC17.31■□□□□ 0.36
RTFDC1Q9BY42 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 PSAT1P2-201ENST00000426107 972 ntBASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 EEF1GP8-201ENST00000506566 1154 ntBASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AC092862.1-201ENST00000541534 533 ntBASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 ABHD17AP9-201ENST00000561925 548 ntBASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 CMC2-204ENST00000562713 573 ntTSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 CMC2-209ENST00000565108 399 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 AMT-256ENST00000638063 1783 ntTSL 5 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.3■□□□□ 0.36
RTFDC1Q9BY42 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 AL109809.1-201ENST00000418979 1367 ntBASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 SHMT1P1-201ENST00000419974 1312 ntBASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 HLA-DPA2-205ENST00000433582 733 ntBASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 KRT18P62-201ENST00000446618 1287 ntBASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 STK24P1-201ENST00000455035 1291 ntBASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 SLC25A15P3-201ENST00000505530 290 ntBASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 RBM4-207ENST00000506523 654 ntTSL 3 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RTFDC1Q9BY42 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms