Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB4Q8WW32 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AL109954.1-202ENST00000564051 2148 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC073347.1-201ENST00000421633 2643 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC027237.1-201ENST00000560942 655 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 HERC2P11-201ENST00000562845 725 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC100756.2-201ENST00000569537 736 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AP000322.3-201ENST00000608665 388 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 AC105137.3-201ENST00000617588 984 ntBASIC14.51□□□□□ -0.09
HMGB4Q8WW32 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB4Q8WW32 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 AC090502.4-201ENST00000551714 1386 ntBASIC14.5□□□□□ -0.09
HMGB4Q8WW32 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 AC092580.1-201ENST00000433998 658 ntBASIC14.5□□□□□ -0.09
HMGB4Q8WW32 AC092638.2-201ENST00000441105 947 ntBASIC14.5□□□□□ -0.09
HMGB4Q8WW32 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
HMGB4Q8WW32 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGB4Q8WW32 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms