Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 AC003686.1-201ENST00000550956 1034 ntBASIC13.46□□□□□ -0.25
RNF4P78317 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.46□□□□□ -0.25
RNF4P78317 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.46□□□□□ -0.25
RNF4P78317 AC124068.2-201ENST00000569473 1109 ntBASIC13.46□□□□□ -0.25
RNF4P78317 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.46□□□□□ -0.25
RNF4P78317 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.46□□□□□ -0.25
RNF4P78317 AC018629.1-201ENST00000623381 1736 ntBASIC13.46□□□□□ -0.25
RNF4P78317 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 RAN-210ENST00000541630 1475 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.46□□□□□ -0.25
RNF4P78317 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.46□□□□□ -0.25
RNF4P78317 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
RNF4P78317 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNF4P78317 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
RNF4P78317 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNF4P78317 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNF4P78317 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNF4P78317 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.46□□□□□ -0.26
RNF4P78317 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
RNF4P78317 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
RNF4P78317 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.46□□□□□ -0.26
RNF4P78317 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
RNF4P78317 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 RN7SL832P-201ENST00000607781 1756 ntBASIC13.45□□□□□ -0.26
RNF4P78317 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 AL161932.2-201ENST00000435436 679 ntBASIC13.45□□□□□ -0.26
RNF4P78317 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 AC005077.2-201ENST00000449786 690 ntBASIC13.45□□□□□ -0.26
RNF4P78317 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC13.45□□□□□ -0.26
RNF4P78317 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 PGAM1P5-201ENST00000548011 764 ntBASIC13.45□□□□□ -0.26
RNF4P78317 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 ACTG1P17-201ENST00000558391 1119 ntBASIC13.45□□□□□ -0.26
RNF4P78317 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.45□□□□□ -0.26
RNF4P78317 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.45□□□□□ -0.26
RNF4P78317 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 AC091544.8-201ENST00000619490 361 ntBASIC13.45□□□□□ -0.26
RNF4P78317 AC092299.1-201ENST00000632679 757 ntBASIC13.45□□□□□ -0.26
RNF4P78317 AL139099.5-201ENST00000635274 300 ntBASIC13.45□□□□□ -0.26
RNF4P78317 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 AC011498.7-201ENST00000624986 2027 ntBASIC13.45□□□□□ -0.26
RNF4P78317 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.45□□□□□ -0.26
RNF4P78317 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.45□□□□□ -0.26
RNF4P78317 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNF4P78317 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.45□□□□□ -0.26
RNF4P78317 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 AL133338.1-201ENST00000565695 1517 ntBASIC13.44□□□□□ -0.26
RNF4P78317 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.44□□□□□ -0.26
RNF4P78317 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNF4P78317 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
RNF4P78317 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms