Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.02□□□□□ -0.32
CLRN1P58418 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLRN1P58418 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CLRN1P58418 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
CLRN1P58418 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CLRN1P58418 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
CLRN1P58418 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.02□□□□□ -0.33
CLRN1P58418 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.02□□□□□ -0.33
CLRN1P58418 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 C2orf69P2-201ENST00000562032 1123 ntBASIC13.02□□□□□ -0.33
CLRN1P58418 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.02□□□□□ -0.33
CLRN1P58418 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.02□□□□□ -0.33
CLRN1P58418 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CLRN1P58418 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
CLRN1P58418 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 AC020910.6-201ENST00000623084 1459 ntBASIC13.02□□□□□ -0.33
CLRN1P58418 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.02□□□□□ -0.33
CLRN1P58418 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CLRN1P58418 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
CLRN1P58418 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 MIR326-201ENST00000362220 95 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 AC026954.1-201ENST00000429771 1293 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 CHMP1AP1-201ENST00000445563 662 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 HIST2H2BB-201ENST00000449108 381 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.01□□□□□ -0.33
CLRN1P58418 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CLRN1P58418 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC13.01□□□□□ -0.33
CLRN1P58418 AC005586.2-201ENST00000563946 837 ntBASIC13.01□□□□□ -0.33
CLRN1P58418 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.01□□□□□ -0.33
CLRN1P58418 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.01□□□□□ -0.33
CLRN1P58418 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CLRN1P58418 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms