Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC005089.1-201ENST00000619486 2241 ntBASIC15.03■□□□□ -0
COL4A4P53420 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL4A4P53420 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL4A4P53420 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC15.03■□□□□ -0
COL4A4P53420 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 HSPA8P5-201ENST00000456928 2069 ntBASIC15.03■□□□□ -0
COL4A4P53420 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 CICP16-201ENST00000502609 2813 ntBASIC15.03■□□□□ -0
COL4A4P53420 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 AP000244.1-201ENST00000424582 201 ntBASIC15.03■□□□□ -0
COL4A4P53420 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC15.03■□□□□ -0
COL4A4P53420 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC15.03■□□□□ -0
COL4A4P53420 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
COL4A4P53420 CTBP2P6-201ENST00000526402 1229 ntBASIC15.03■□□□□ -0
COL4A4P53420 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 AC142086.5-202ENST00000562500 217 ntBASIC15.03■□□□□ -0
COL4A4P53420 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC15.03■□□□□ -0
COL4A4P53420 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC15.03■□□□□ -0
COL4A4P53420 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC15.03■□□□□ -0
COL4A4P53420 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
COL4A4P53420 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
COL4A4P53420 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
COL4A4P53420 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL4A4P53420 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
COL4A4P53420 CCT8L1P-201ENST00000465400 1674 ntBASIC15.02■□□□□ -0
COL4A4P53420 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
COL4A4P53420 AC007952.5-201ENST00000572818 1486 ntBASIC15.02■□□□□ -0
COL4A4P53420 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
COL4A4P53420 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
COL4A4P53420 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.02■□□□□ -0
COL4A4P53420 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
COL4A4P53420 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.02■□□□□ -0
COL4A4P53420 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
COL4A4P53420 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL4A4P53420 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
COL4A4P53420 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
COL4A4P53420 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL4A4P53420 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL4A4P53420 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
COL4A4P53420 AL121949.3-201ENST00000406684 385 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC15.02□□□□□ -0.01
COL4A4P53420 BX679664.3-201ENST00000414070 555 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 PGAM1P11-201ENST00000416729 680 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 LINP1-201ENST00000417112 917 ntTSL 2 BASIC15.02□□□□□ -0.01
COL4A4P53420 FDPSP7-201ENST00000429043 1054 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 AC113935.1-201ENST00000471722 555 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC15.02□□□□□ -0.01
COL4A4P53420 EEF1GP8-201ENST00000506566 1154 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC15.02□□□□□ -0.01
COL4A4P53420 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC15.02□□□□□ -0.01
COL4A4P53420 AC006116.2-201ENST00000589958 988 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 AC091769.1-201ENST00000619576 568 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 AIRN-201ENST00000601203 4374 ntBASIC15.02□□□□□ -0.01
COL4A4P53420 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL4A4P53420 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
COL4A4P53420 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.02□□□□□ -0.01
COL4A4P53420 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.02□□□□□ -0.01
COL4A4P53420 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL4A4P53420 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL4A4P53420 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
COL4A4P53420 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
COL4A4P53420 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
COL4A4P53420 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 ABCD1P4-201ENST00000399687 604 ntBASIC15.01□□□□□ -0.01
COL4A4P53420 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC15.01□□□□□ -0.01
COL4A4P53420 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
COL4A4P53420 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC15.01□□□□□ -0.01
COL4A4P53420 IGKV1OR-2-201ENST00000457995 350 ntBASIC15.01□□□□□ -0.01
COL4A4P53420 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC15.01□□□□□ -0.01
COL4A4P53420 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC15.01□□□□□ -0.01
COL4A4P53420 AL022313.4-201ENST00000562756 2046 ntBASIC15.01□□□□□ -0.01
COL4A4P53420 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC15.01□□□□□ -0.01
COL4A4P53420 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC15.01□□□□□ -0.01
COL4A4P53420 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms