Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AC092933.1-201ENST00000393644 945 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CR1P49238 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CR1P49238 FAM197Y7-201ENST00000432892 766 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 HMGN1P19-201ENST00000436976 333 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.82□□□□□ -0.36
CX3CR1P49238 INE1-201ENST00000456273 945 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC12.82□□□□□ -0.36
CX3CR1P49238 USP32P1-208ENST00000506594 1164 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CR1P49238 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AC008735.3-201ENST00000596646 500 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 AC233724.13-201ENST00000598383 410 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AL022328.1-201ENST00000610050 478 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CR1P49238 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.82□□□□□ -0.36
CX3CR1P49238 AC002472.3-201ENST00000640124 621 ntBASIC12.82□□□□□ -0.36
CX3CR1P49238 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CX3CR1P49238 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CX3CR1P49238 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 KRT8P24-201ENST00000560290 1559 ntBASIC12.81□□□□□ -0.36
CX3CR1P49238 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
CX3CR1P49238 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.81□□□□□ -0.36
CX3CR1P49238 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 AC004945.1-201ENST00000416738 983 ntBASIC12.81□□□□□ -0.36
CX3CR1P49238 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.81□□□□□ -0.36
CX3CR1P49238 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 FTH1P14-201ENST00000482930 551 ntBASIC12.81□□□□□ -0.36
CX3CR1P49238 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC12.81□□□□□ -0.36
CX3CR1P49238 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.81□□□□□ -0.36
CX3CR1P49238 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
CX3CR1P49238 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 AC138951.2-201ENST00000623455 1161 ntBASIC12.81□□□□□ -0.36
CX3CR1P49238 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 AL731571.1-201ENST00000617058 5428 ntBASIC12.81□□□□□ -0.36
CX3CR1P49238 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC12.81□□□□□ -0.36
CX3CR1P49238 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
CX3CR1P49238 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CX3CR1P49238 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms