Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 FAM8A2P-201ENST00000528813 1142 ntBASIC13.36□□□□□ -0.27
NKX2-2O95096 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX2-2O95096 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.36□□□□□ -0.27
NKX2-2O95096 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX2-2O95096 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX2-2O95096 AL359881.2-201ENST00000602973 570 ntBASIC13.36□□□□□ -0.27
NKX2-2O95096 AC007663.3-201ENST00000609632 465 ntBASIC13.36□□□□□ -0.27
NKX2-2O95096 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.36□□□□□ -0.27
NKX2-2O95096 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.36□□□□□ -0.27
NKX2-2O95096 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.36□□□□□ -0.27
NKX2-2O95096 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX2-2O95096 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX2-2O95096 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 CCT8L1P-201ENST00000465400 1674 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
NKX2-2O95096 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
NKX2-2O95096 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 RPS2P32-201ENST00000439199 892 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.35□□□□□ -0.27
NKX2-2O95096 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 AC140658.4-201ENST00000561990 352 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.35□□□□□ -0.27
NKX2-2O95096 BAP1-211ENST00000615113 489 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 AC068587.8-201ENST00000641239 219 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 AL157996.1-201ENST00000624684 2299 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 AC018629.1-201ENST00000623381 1736 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
NKX2-2O95096 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.35□□□□□ -0.27
NKX2-2O95096 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.35□□□□□ -0.27
NKX2-2O95096 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
NKX2-2O95096 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
NKX2-2O95096 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
NKX2-2O95096 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-2O95096 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-2O95096 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-2O95096 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
NKX2-2O95096 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-2O95096 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-2O95096 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.34□□□□□ -0.27
NKX2-2O95096 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-2O95096 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
NKX2-2O95096 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms