Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CCNL2P1-201ENST00000512846 969 ntBASIC19.73■□□□□ 0.75
NPHP4O75161 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC19.73■□□□□ 0.75
NPHP4O75161 OR4A49P-201ENST00000527050 632 ntBASIC19.73■□□□□ 0.75
NPHP4O75161 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC19.73■□□□□ 0.75
NPHP4O75161 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
NPHP4O75161 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC19.73■□□□□ 0.75
NPHP4O75161 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC19.73■□□□□ 0.75
NPHP4O75161 AC021321.1-201ENST00000607397 1113 ntBASIC19.73■□□□□ 0.75
NPHP4O75161 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
NPHP4O75161 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP4O75161 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP4O75161 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP4O75161 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
NPHP4O75161 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP4O75161 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP4O75161 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
NPHP4O75161 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP4O75161 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
NPHP4O75161 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP4O75161 AL365203.3-201ENST00000609742 2057 ntBASIC19.72■□□□□ 0.75
NPHP4O75161 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC19.72■□□□□ 0.75
NPHP4O75161 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
NPHP4O75161 MIR1226-201ENST00000408658 75 ntBASIC19.72■□□□□ 0.75
NPHP4O75161 MIR1307-201ENST00000408840 149 ntBASIC19.72■□□□□ 0.75
NPHP4O75161 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC19.72■□□□□ 0.75
NPHP4O75161 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC19.72■□□□□ 0.75
NPHP4O75161 MIR4640-201ENST00000581824 90 ntBASIC19.72■□□□□ 0.75
NPHP4O75161 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
NPHP4O75161 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP4O75161 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC19.72■□□□□ 0.75
NPHP4O75161 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP4O75161 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 LYRM1-202ENST00000396052 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC19.72■□□□□ 0.75
NPHP4O75161 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
NPHP4O75161 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP4O75161 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 CRIP1P2-201ENST00000425396 228 ntBASIC19.71■□□□□ 0.75
NPHP4O75161 CD37-203ENST00000426897 1204 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 UGT1A12P-201ENST00000447084 853 ntBASIC19.71■□□□□ 0.75
NPHP4O75161 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP4O75161 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
NPHP4O75161 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP4O75161 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
NPHP4O75161 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.71■□□□□ 0.75
NPHP4O75161 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
NPHP4O75161 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP4O75161 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP4O75161 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
NPHP4O75161 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP4O75161 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP4O75161 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
NPHP4O75161 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC19.7■□□□□ 0.74
NPHP4O75161 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP4O75161 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC19.7■□□□□ 0.74
NPHP4O75161 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC19.7■□□□□ 0.74
NPHP4O75161 HLA-W-207ENST00000439514 771 ntBASIC19.7■□□□□ 0.74
NPHP4O75161 RN7SL69P-201ENST00000468423 272 ntBASIC19.7■□□□□ 0.74
NPHP4O75161 PHBP18-201ENST00000546648 813 ntBASIC19.7■□□□□ 0.74
NPHP4O75161 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
NPHP4O75161 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms