Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SHOX2O60902 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
SHOX2O60902 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 SALL4P6-201ENST00000429385 1691 ntBASIC14.52□□□□□ -0.09
SHOX2O60902 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHOX2O60902 AC022400.8-201ENST00000623453 3599 ntBASIC14.52□□□□□ -0.09
SHOX2O60902 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 AL359510.2-201ENST00000624958 2249 ntBASIC14.51□□□□□ -0.09
SHOX2O60902 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SHOX2O60902 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SHOX2O60902 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.51□□□□□ -0.09
SHOX2O60902 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
SHOX2O60902 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.51□□□□□ -0.09
SHOX2O60902 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
SHOX2O60902 AL161932.2-201ENST00000435436 679 ntBASIC14.51□□□□□ -0.09
SHOX2O60902 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.51□□□□□ -0.09
SHOX2O60902 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
SHOX2O60902 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.51□□□□□ -0.09
SHOX2O60902 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.51□□□□□ -0.09
SHOX2O60902 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.51□□□□□ -0.09
SHOX2O60902 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
SHOX2O60902 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
SHOX2O60902 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 ACSM2B-201ENST00000329697 2935 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
SHOX2O60902 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
SHOX2O60902 AC092139.4-201ENST00000624318 2794 ntBASIC14.51□□□□□ -0.09
SHOX2O60902 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 CYP24A1-203ENST00000395955 2227 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 ZBTB20-211ENST00000471418 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SHOX2O60902 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 CD82-202ENST00000342935 967 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SHOX2O60902 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.5□□□□□ -0.09
SHOX2O60902 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.5□□□□□ -0.09
SHOX2O60902 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 ALG1L5P-201ENST00000482043 771 ntBASIC14.5□□□□□ -0.09
SHOX2O60902 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.5□□□□□ -0.09
SHOX2O60902 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
SHOX2O60902 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.5□□□□□ -0.09
SHOX2O60902 CR392039.2-201ENST00000623182 509 ntBASIC14.5□□□□□ -0.09
SHOX2O60902 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
SHOX2O60902 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
SHOX2O60902 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
SHOX2O60902 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms