Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC188H7C350 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.12■□□□□ 0.01
CCDC188H7C350 MRPS18AP1-201ENST00000414458 589 ntBASIC15.12■□□□□ 0.01
CCDC188H7C350 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 HNRNPA1P13-201ENST00000510646 963 ntBASIC15.12■□□□□ 0.01
CCDC188H7C350 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC188H7C350 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
CCDC188H7C350 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC188H7C350 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CCDC188H7C350 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC188H7C350 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC188H7C350 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CCDC188H7C350 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CCDC188H7C350 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 PCDHA5-203ENST00000614258 4248 ntBASIC15.11■□□□□ 0.01
CCDC188H7C350 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 F2-205ENST00000530231 1849 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 RN7SKP175-201ENST00000408472 289 ntBASIC15.11■□□□□ 0.01
CCDC188H7C350 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.11■□□□□ 0.01
CCDC188H7C350 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 AL512638.1-201ENST00000457493 794 ntBASIC15.11■□□□□ 0.01
CCDC188H7C350 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.11■□□□□ 0.01
CCDC188H7C350 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 PEG13-201ENST00000631594 5667 ntBASIC15.11■□□□□ 0.01
CCDC188H7C350 AGAP12P-201ENST00000585227 2359 ntBASIC15.11■□□□□ 0.01
CCDC188H7C350 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC15.11■□□□□ 0.01
CCDC188H7C350 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC188H7C350 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CCDC188H7C350 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC188H7C350 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC188H7C350 AL359845.1-201ENST00000458202 1648 ntBASIC15.1■□□□□ 0.01
CCDC188H7C350 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC15.1■□□□□ 0.01
CCDC188H7C350 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC188H7C350 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC188H7C350 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CCDC188H7C350 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CCDC188H7C350 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms