Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 ALDH1A3-203ENST00000557963 1670 ntBASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.25■■□□□ 1.79
CTDP1Q9Y5B0 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
CTDP1Q9Y5B0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
CTDP1Q9Y5B0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.24■■□□□ 1.79
CTDP1Q9Y5B0 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CTDP1Q9Y5B0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CTDP1Q9Y5B0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.24■■□□□ 1.79
CTDP1Q9Y5B0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC26.23■■□□□ 1.79
CTDP1Q9Y5B0 AL138724.1-201ENST00000606771 1088 ntBASIC26.23■■□□□ 1.79
CTDP1Q9Y5B0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CTDP1Q9Y5B0 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CTDP1Q9Y5B0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 AC009086.3-201ENST00000623486 1008 ntBASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 AL136967.2-201ENST00000623968 743 ntBASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.22■■□□□ 1.79
CTDP1Q9Y5B0 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 AC105265.2-201ENST00000467189 838 ntBASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC26.21■■□□□ 1.79
CTDP1Q9Y5B0 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CTDP1Q9Y5B0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.79
CTDP1Q9Y5B0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 AP001330.3-201ENST00000520123 633 ntBASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 AC011298.3-201ENST00000615796 283 ntBASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC26.2■■□□□ 1.78
CTDP1Q9Y5B0 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 MIR939-201ENST00000401314 82 ntBASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 AC091305.1-201ENST00000479476 895 ntBASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CTDP1Q9Y5B0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.18■■□□□ 1.78
CTDP1Q9Y5B0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
CTDP1Q9Y5B0 AC135731.1-201ENST00000569415 2548 ntBASIC26.17■■□□□ 1.78
CTDP1Q9Y5B0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
CTDP1Q9Y5B0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CTDP1Q9Y5B0 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CTDP1Q9Y5B0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
CTDP1Q9Y5B0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 AC008764.7-201ENST00000593779 1081 ntBASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CTDP1Q9Y5B0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 AC006455.2-201ENST00000429931 906 ntBASIC26.15■■□□□ 1.78
CTDP1Q9Y5B0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.15■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms