Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 PBX2P1-201ENST00000493219 1291 ntBASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 AC005837.3-201ENST00000612163 286 ntBASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 AC135279.3-201ENST00000610945 1311 ntBASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLCF1Q9UBD9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLCF1Q9UBD9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 AC099791.2-201ENST00000605725 427 ntBASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLCF1Q9UBD9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 AC024257.2-201ENST00000549699 147 ntBASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.2■□□□□ 0.82
CLCF1Q9UBD9 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 SYT6-210ENST00000641643 1587 ntBASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.19■□□□□ 0.82
CLCF1Q9UBD9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 AC241377.3-202ENST00000626088 1088 ntBASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 AC241585.3-202ENST00000628937 1088 ntBASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 AC245100.8-202ENST00000629247 1058 ntBASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLCF1Q9UBD9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 AL031432.3-201ENST00000607698 485 ntBASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CLCF1Q9UBD9 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 EDA-201ENST00000338901 1233 ntBASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 SERBP1P1-201ENST00000396021 1160 ntBASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 AC141586.4-201ENST00000624558 1573 ntBASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLCF1Q9UBD9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms