Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC29.06■■■□□ 2.24
USP42Q9H9J4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
USP42Q9H9J4 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
USP42Q9H9J4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
USP42Q9H9J4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC29.06■■■□□ 2.24
USP42Q9H9J4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC29.06■■■□□ 2.24
USP42Q9H9J4 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.24
USP42Q9H9J4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
USP42Q9H9J4 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP42Q9H9J4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP42Q9H9J4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
USP42Q9H9J4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.05■■■□□ 2.24
USP42Q9H9J4 RARRES2P11-201ENST00000635158 484 ntBASIC29.05■■■□□ 2.24
USP42Q9H9J4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC29.05■■■□□ 2.24
USP42Q9H9J4 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP42Q9H9J4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP42Q9H9J4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
USP42Q9H9J4 AK1-201ENST00000223836 736 ntTSL 3 BASIC29.04■■■□□ 2.24
USP42Q9H9J4 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC29.04■■■□□ 2.24
USP42Q9H9J4 AC090192.1-201ENST00000517740 490 ntBASIC29.04■■■□□ 2.24
USP42Q9H9J4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.04■■■□□ 2.24
USP42Q9H9J4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
USP42Q9H9J4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
USP42Q9H9J4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 ASB1-202ENST00000409297 878 ntTSL 5 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
USP42Q9H9J4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 MIR3181-201ENST00000578512 73 ntBASIC29.03■■■□□ 2.24
USP42Q9H9J4 IKBKGP1-201ENST00000612193 1073 ntBASIC29.03■■■□□ 2.24
USP42Q9H9J4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.03■■■□□ 2.24
USP42Q9H9J4 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
USP42Q9H9J4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
USP42Q9H9J4 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC29.02■■■□□ 2.24
USP42Q9H9J4 HACD1-201ENST00000326961 773 ntTSL 2 BASIC29.02■■■□□ 2.24
USP42Q9H9J4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC29.02■■■□□ 2.24
USP42Q9H9J4 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
USP42Q9H9J4 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
USP42Q9H9J4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC29.02■■■□□ 2.24
USP42Q9H9J4 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC29.02■■■□□ 2.24
USP42Q9H9J4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC29.02■■■□□ 2.24
USP42Q9H9J4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
USP42Q9H9J4 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.24
USP42Q9H9J4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.01■■■□□ 2.23
USP42Q9H9J4 GRAMD4P2-201ENST00000423297 1097 ntBASIC29.01■■■□□ 2.23
USP42Q9H9J4 AC034268.1-201ENST00000441047 882 ntBASIC29.01■■■□□ 2.23
USP42Q9H9J4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC29.01■■■□□ 2.23
USP42Q9H9J4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
USP42Q9H9J4 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
USP42Q9H9J4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
USP42Q9H9J4 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
USP42Q9H9J4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
USP42Q9H9J4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29■■■□□ 2.23
USP42Q9H9J4 AC009086.3-201ENST00000623486 1008 ntBASIC29■■■□□ 2.23
USP42Q9H9J4 AL031602.1-201ENST00000633169 911 ntBASIC29■■■□□ 2.23
USP42Q9H9J4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC29■■■□□ 2.23
USP42Q9H9J4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC29■■■□□ 2.23
USP42Q9H9J4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC29■■■□□ 2.23
USP42Q9H9J4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
USP42Q9H9J4 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
USP42Q9H9J4 MIR6089-201ENST00000616698 64 ntBASIC28.99■■■□□ 2.23
USP42Q9H9J4 AL022069.1-201ENST00000568025 1636 ntBASIC28.99■■■□□ 2.23
USP42Q9H9J4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC28.99■■■□□ 2.23
USP42Q9H9J4 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC28.99■■■□□ 2.23
USP42Q9H9J4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC28.98■■■□□ 2.23
USP42Q9H9J4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
USP42Q9H9J4 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
USP42Q9H9J4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
USP42Q9H9J4 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
USP42Q9H9J4 AC022517.1-201ENST00000592429 346 ntBASIC28.98■■■□□ 2.23
USP42Q9H9J4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC28.98■■■□□ 2.23
USP42Q9H9J4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.98■■■□□ 2.23
USP42Q9H9J4 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.98■■■□□ 2.23
USP42Q9H9J4 AC022211.4-201ENST00000625094 2161 ntBASIC28.98■■■□□ 2.23
USP42Q9H9J4 KRT18P5-201ENST00000436075 1291 ntBASIC28.97■■■□□ 2.23
USP42Q9H9J4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
USP42Q9H9J4 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
USP42Q9H9J4 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.97■■■□□ 2.23
USP42Q9H9J4 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
USP42Q9H9J4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC28.97■■■□□ 2.23
USP42Q9H9J4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC28.97■■■□□ 2.23
USP42Q9H9J4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC28.97■■■□□ 2.23
USP42Q9H9J4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
USP42Q9H9J4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC28.96■■■□□ 2.23
USP42Q9H9J4 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.96■■■□□ 2.23
USP42Q9H9J4 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
USP42Q9H9J4 AC142381.3-201ENST00000568208 1670 ntBASIC28.96■■■□□ 2.23
USP42Q9H9J4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.96■■■□□ 2.23
USP42Q9H9J4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
USP42Q9H9J4 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
USP42Q9H9J4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.23
USP42Q9H9J4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
USP42Q9H9J4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
USP42Q9H9J4 YBX1P1-201ENST00000445822 960 ntBASIC28.95■■■□□ 2.23
USP42Q9H9J4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.95■■■□□ 2.23
USP42Q9H9J4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.95■■■□□ 2.23
USP42Q9H9J4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC28.95■■■□□ 2.22
USP42Q9H9J4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms