Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.84■□□□□ 0.61
SSX3Q99909 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SSX3Q99909 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SSX3Q99909 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SSX3Q99909 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SSX3Q99909 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SSX3Q99909 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSX3Q99909 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SSX3Q99909 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSX3Q99909 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SSX3Q99909 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.82■□□□□ 0.6
SSX3Q99909 TSPY9P-201ENST00000440215 945 ntBASIC18.82■□□□□ 0.6
SSX3Q99909 TSPY11P-201ENST00000442607 1045 ntBASIC18.82■□□□□ 0.6
SSX3Q99909 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.82■□□□□ 0.6
SSX3Q99909 AC092028.1-203ENST00000608262 953 ntBASIC18.82■□□□□ 0.6
SSX3Q99909 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.82■□□□□ 0.6
SSX3Q99909 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC18.82■□□□□ 0.6
SSX3Q99909 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SSX3Q99909 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.81■□□□□ 0.6
SSX3Q99909 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.81■□□□□ 0.6
SSX3Q99909 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.81■□□□□ 0.6
SSX3Q99909 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SSX3Q99909 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
SSX3Q99909 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.81■□□□□ 0.6
SSX3Q99909 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSX3Q99909 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SSX3Q99909 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 UNC93B8-201ENST00000511903 705 ntBASIC18.8■□□□□ 0.6
SSX3Q99909 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.8■□□□□ 0.6
SSX3Q99909 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSX3Q99909 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX3Q99909 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SSX3Q99909 KRT16P3-201ENST00000439127 1283 ntBASIC18.79■□□□□ 0.6
SSX3Q99909 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.79■□□□□ 0.6
SSX3Q99909 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SSX3Q99909 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX3Q99909 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX3Q99909 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.78■□□□□ 0.6
SSX3Q99909 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX3Q99909 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX3Q99909 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.78■□□□□ 0.6
SSX3Q99909 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.78■□□□□ 0.6
SSX3Q99909 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX3Q99909 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.78■□□□□ 0.6
SSX3Q99909 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX3Q99909 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX3Q99909 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX3Q99909 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SSX3Q99909 AC022211.4-201ENST00000625094 2161 ntBASIC18.77■□□□□ 0.6
SSX3Q99909 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX3Q99909 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX3Q99909 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SSX3Q99909 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX3Q99909 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSX3Q99909 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSX3Q99909 SLC6A10P-202ENST00000431994 2058 ntBASIC18.77■□□□□ 0.59
SSX3Q99909 AF131216.4-201ENST00000638924 1588 ntBASIC18.76■□□□□ 0.59
SSX3Q99909 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX3Q99909 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
SSX3Q99909 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms