Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CPNE1Q99829 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.69■■□□□ 1.22
CPNE1Q99829 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CPNE1Q99829 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CPNE1Q99829 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.69■■□□□ 1.22
CPNE1Q99829 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.69■■□□□ 1.22
CPNE1Q99829 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
CPNE1Q99829 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CPNE1Q99829 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CPNE1Q99829 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.69■■□□□ 1.22
CPNE1Q99829 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
CPNE1Q99829 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
CPNE1Q99829 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
CPNE1Q99829 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPNE1Q99829 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.67■■□□□ 1.22
CPNE1Q99829 BHLHE23-202ENST00000612929 1109 ntBASIC22.67■■□□□ 1.22
CPNE1Q99829 AC074183.2-201ENST00000623112 922 ntBASIC22.67■■□□□ 1.22
CPNE1Q99829 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPNE1Q99829 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CPNE1Q99829 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CPNE1Q99829 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
CPNE1Q99829 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.66■■□□□ 1.22
CPNE1Q99829 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.66■■□□□ 1.22
CPNE1Q99829 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CPNE1Q99829 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 AL117328.2-201ENST00000624617 1940 ntBASIC22.65■■□□□ 1.22
CPNE1Q99829 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
CPNE1Q99829 KRT18P24-201ENST00000344739 1156 ntBASIC22.65■■□□□ 1.22
CPNE1Q99829 ATP5G2P3-201ENST00000429083 425 ntBASIC22.65■■□□□ 1.22
CPNE1Q99829 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CPNE1Q99829 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.65■■□□□ 1.22
CPNE1Q99829 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.64■■□□□ 1.22
CPNE1Q99829 AC233723.2-201ENST00000623798 2106 ntBASIC22.64■■□□□ 1.22
CPNE1Q99829 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
CPNE1Q99829 AF131216.4-201ENST00000638924 1588 ntBASIC22.64■■□□□ 1.22
CPNE1Q99829 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
CPNE1Q99829 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
CPNE1Q99829 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
CPNE1Q99829 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.64■■□□□ 1.21
CPNE1Q99829 AC004987.1-201ENST00000428627 508 ntBASIC22.64■■□□□ 1.21
CPNE1Q99829 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.21
CPNE1Q99829 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.63■■□□□ 1.21
CPNE1Q99829 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC22.63■■□□□ 1.21
CPNE1Q99829 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.63■■□□□ 1.21
CPNE1Q99829 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.63■■□□□ 1.21
CPNE1Q99829 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CPNE1Q99829 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.62■■□□□ 1.21
CPNE1Q99829 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 MIR4281-201ENST00000580852 62 ntBASIC22.62■■□□□ 1.21
CPNE1Q99829 THA1P-201ENST00000590384 1145 ntBASIC22.62■■□□□ 1.21
CPNE1Q99829 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
CPNE1Q99829 PVT1_1.1-201ENST00000615125 194 ntBASIC22.62■■□□□ 1.21
CPNE1Q99829 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
CPNE1Q99829 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.62■■□□□ 1.21
CPNE1Q99829 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
CPNE1Q99829 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CPNE1Q99829 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CPNE1Q99829 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
CPNE1Q99829 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.61■■□□□ 1.21
CPNE1Q99829 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CPNE1Q99829 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
CPNE1Q99829 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CPNE1Q99829 C1orf229-201ENST00000623686 2258 ntBASIC22.61■■□□□ 1.21
CPNE1Q99829 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
CPNE1Q99829 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.61■■□□□ 1.21
CPNE1Q99829 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
CPNE1Q99829 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.6■■□□□ 1.21
CPNE1Q99829 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.6■■□□□ 1.21
CPNE1Q99829 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CPNE1Q99829 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.6■■□□□ 1.21
CPNE1Q99829 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.6■■□□□ 1.21
CPNE1Q99829 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.6■■□□□ 1.21
CPNE1Q99829 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
CPNE1Q99829 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CPNE1Q99829 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC22.59■■□□□ 1.21
CPNE1Q99829 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms