Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
SHROOM3Q8TF72 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHROOM3Q8TF72 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.22■■□□□ 1.31
SHROOM3Q8TF72 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.22■■□□□ 1.31
SHROOM3Q8TF72 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SHROOM3Q8TF72 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SHROOM3Q8TF72 TFPT-201ENST00000391757 774 ntTSL 5 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SHROOM3Q8TF72 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
SHROOM3Q8TF72 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SHROOM3Q8TF72 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SHROOM3Q8TF72 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 AC005703.6-201ENST00000623265 1329 ntBASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 TSPY9P-201ENST00000440215 945 ntBASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 TSPY11P-201ENST00000442607 1045 ntBASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.17■■□□□ 1.3
SHROOM3Q8TF72 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 AC010997.5-201ENST00000609182 354 ntBASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 MIR6724-1-201ENST00000616420 92 ntBASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 MIR6724-2-201ENST00000616483 92 ntBASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 MIR6724-4-201ENST00000617390 92 ntBASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 MIR6724-3-201ENST00000622482 92 ntBASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 CD72-202ENST00000378430 585 ntTSL 3 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 NKILA-201ENST00000613231 537 ntTSL 4 BASIC23.16■■□□□ 1.3
SHROOM3Q8TF72 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.15■■□□□ 1.3
SHROOM3Q8TF72 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms