Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLRN3Q8NCR9 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN3Q8NCR9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.1■□□□□ 0.49
CLRN3Q8NCR9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN3Q8NCR9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN3Q8NCR9 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLRN3Q8NCR9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CLRN3Q8NCR9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLRN3Q8NCR9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLRN3Q8NCR9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CLRN3Q8NCR9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
CLRN3Q8NCR9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 AC242852.2-201ENST00000615738 1807 ntBASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLRN3Q8NCR9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 RARRES2P7-201ENST00000567349 469 ntBASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CLRN3Q8NCR9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.05■□□□□ 0.48
CLRN3Q8NCR9 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CLRN3Q8NCR9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 FBXW4P1-201ENST00000426721 2239 ntBASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC18.03■□□□□ 0.48
CLRN3Q8NCR9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms