Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
LINC00643Q86TS7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LINC00643Q86TS7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00643Q86TS7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00643Q86TS7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00643Q86TS7 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
LINC00643Q86TS7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LINC00643Q86TS7 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC14.27□□□□□ -0.12
LINC00643Q86TS7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LINC00643Q86TS7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LINC00643Q86TS7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC14.25□□□□□ -0.13
LINC00643Q86TS7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00643Q86TS7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 AC138932.1-201ENST00000534164 6830 ntBASIC14.23□□□□□ -0.13
LINC00643Q86TS7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00643Q86TS7 AC015813.7-201ENST00000623294 581 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms