Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.9■■□□□ 1.58
CCDC40Q4G0X9 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.9■■□□□ 1.58
CCDC40Q4G0X9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CCDC40Q4G0X9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC24.89■■□□□ 1.57
CCDC40Q4G0X9 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.89■■□□□ 1.57
CCDC40Q4G0X9 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CCDC40Q4G0X9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC40Q4G0X9 AC004448.1-201ENST00000458332 883 ntBASIC24.88■■□□□ 1.57
CCDC40Q4G0X9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
CCDC40Q4G0X9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC40Q4G0X9 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 AL031848.2-201ENST00000607670 837 ntBASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 AC133561.1-201ENST00000568600 2415 ntBASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 AC068473.5-201ENST00000616428 2072 ntBASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC24.87■■□□□ 1.57
CCDC40Q4G0X9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC40Q4G0X9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
CCDC40Q4G0X9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC40Q4G0X9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.83■■□□□ 1.57
CCDC40Q4G0X9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.83■■□□□ 1.57
CCDC40Q4G0X9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC24.83■■□□□ 1.57
CCDC40Q4G0X9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC40Q4G0X9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC40Q4G0X9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC40Q4G0X9 C9orf163-202ENST00000624034 2573 ntBASIC24.83■■□□□ 1.56
CCDC40Q4G0X9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC40Q4G0X9 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC40Q4G0X9 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 AC092068.2-201ENST00000590491 1708 ntBASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC40Q4G0X9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC40Q4G0X9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC40Q4G0X9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC40Q4G0X9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC40Q4G0X9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC40Q4G0X9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC40Q4G0X9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 AC137630.3-201ENST00000607245 391 ntBASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms