Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CLRN1P58418 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.19■□□□□ 0.82
CLRN1P58418 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.19■□□□□ 0.82
CLRN1P58418 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.19■□□□□ 0.82
CLRN1P58418 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.19■□□□□ 0.82
CLRN1P58418 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
CLRN1P58418 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.19■□□□□ 0.82
CLRN1P58418 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.19■□□□□ 0.82
CLRN1P58418 AC021242.3-201ENST00000607598 1377 ntBASIC20.19■□□□□ 0.82
CLRN1P58418 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLRN1P58418 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CLRN1P58418 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.18■□□□□ 0.82
CLRN1P58418 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLRN1P58418 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLRN1P58418 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.18■□□□□ 0.82
CLRN1P58418 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CLRN1P58418 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CLRN1P58418 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.18■□□□□ 0.82
CLRN1P58418 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.18■□□□□ 0.82
CLRN1P58418 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CLRN1P58418 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.18■□□□□ 0.82
CLRN1P58418 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN1P58418 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN1P58418 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CLRN1P58418 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.17■□□□□ 0.82
CLRN1P58418 Z92544.1-202ENST00000571933 1220 ntBASIC20.17■□□□□ 0.82
CLRN1P58418 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CLRN1P58418 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN1P58418 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CLRN1P58418 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CLRN1P58418 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CLRN1P58418 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.17■□□□□ 0.82
CLRN1P58418 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.16■□□□□ 0.82
CLRN1P58418 DUSP8P5-201ENST00000422884 1815 ntBASIC20.16■□□□□ 0.82
CLRN1P58418 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CLRN1P58418 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.16■□□□□ 0.82
CLRN1P58418 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLRN1P58418 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CLRN1P58418 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
CLRN1P58418 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CLRN1P58418 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.15■□□□□ 0.82
CLRN1P58418 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.15■□□□□ 0.82
CLRN1P58418 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.15■□□□□ 0.82
CLRN1P58418 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.15■□□□□ 0.82
CLRN1P58418 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.15■□□□□ 0.82
CLRN1P58418 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
CLRN1P58418 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
CLRN1P58418 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.15■□□□□ 0.82
CLRN1P58418 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
CLRN1P58418 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLRN1P58418 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.15■□□□□ 0.82
CLRN1P58418 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.14■□□□□ 0.82
CLRN1P58418 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CLRN1P58418 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.14■□□□□ 0.81
CLRN1P58418 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLRN1P58418 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CLRN1P58418 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLRN1P58418 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLRN1P58418 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLRN1P58418 AC009299.2-201ENST00000482477 511 ntBASIC20.14■□□□□ 0.81
CLRN1P58418 AL451085.2-201ENST00000605085 799 ntBASIC20.14■□□□□ 0.81
CLRN1P58418 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CLRN1P58418 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.13■□□□□ 0.81
CLRN1P58418 ANOS2P-203ENST00000472227 1816 ntBASIC20.13■□□□□ 0.81
CLRN1P58418 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.13■□□□□ 0.81
CLRN1P58418 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CLRN1P58418 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.13■□□□□ 0.81
CLRN1P58418 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.13■□□□□ 0.81
CLRN1P58418 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 AC239859.2-201ENST00000444165 318 ntBASIC20.13■□□□□ 0.81
CLRN1P58418 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms