Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HOXA1P49639 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA1P49639 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA1P49639 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HOXA1P49639 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HOXA1P49639 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 HLA-L-211ENST00000482052 1765 ntBASIC18.66■□□□□ 0.58
HOXA1P49639 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.66■□□□□ 0.58
HOXA1P49639 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXA1P49639 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC18.66■□□□□ 0.58
HOXA1P49639 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HOXA1P49639 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HOXA1P49639 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HOXA1P49639 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.66■□□□□ 0.58
HOXA1P49639 FOXO3B-201ENST00000395675 1928 ntBASIC18.65■□□□□ 0.58
HOXA1P49639 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HOXA1P49639 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA1P49639 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXA1P49639 MIR639-201ENST00000384974 98 ntBASIC18.65■□□□□ 0.58
HOXA1P49639 KRT18P10-201ENST00000388836 1287 ntBASIC18.65■□□□□ 0.58
HOXA1P49639 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA1P49639 AC007029.1-201ENST00000604183 313 ntBASIC18.65■□□□□ 0.58
HOXA1P49639 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA1P49639 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXA1P49639 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.65■□□□□ 0.58
HOXA1P49639 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HOXA1P49639 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HOXA1P49639 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HOXA1P49639 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
HOXA1P49639 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA1P49639 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC18.64■□□□□ 0.57
HOXA1P49639 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA1P49639 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA1P49639 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA1P49639 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
HOXA1P49639 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HOXA1P49639 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
HOXA1P49639 AF106564.1-201ENST00000607058 2553 ntBASIC18.63■□□□□ 0.57
HOXA1P49639 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA1P49639 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
HOXA1P49639 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA1P49639 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA1P49639 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
HOXA1P49639 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXA1P49639 SRP68-213ENST00000629930 165 ntTSL 5 BASIC18.63■□□□□ 0.57
HOXA1P49639 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
HOXA1P49639 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.63■□□□□ 0.57
HOXA1P49639 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA1P49639 DUSP8P3-201ENST00000399571 1760 ntBASIC18.63■□□□□ 0.57
HOXA1P49639 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA1P49639 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
HOXA1P49639 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC18.62■□□□□ 0.57
HOXA1P49639 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
HOXA1P49639 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.62■□□□□ 0.57
HOXA1P49639 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA1P49639 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA1P49639 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
HOXA1P49639 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.61■□□□□ 0.57
HOXA1P49639 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
HOXA1P49639 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA1P49639 AL391422.3-201ENST00000603791 2761 ntBASIC18.61■□□□□ 0.57
HOXA1P49639 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HOXA1P49639 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA1P49639 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA1P49639 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HOXA1P49639 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.6■□□□□ 0.57
HOXA1P49639 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC18.6■□□□□ 0.57
HOXA1P49639 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA1P49639 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA1P49639 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HOXA1P49639 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HOXA1P49639 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
HOXA1P49639 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HOXA1P49639 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA1P49639 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA1P49639 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA1P49639 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA1P49639 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HOXA1P49639 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms