Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.18■□□□□ 0.98
RFX3P48380 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RFX3P48380 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
RFX3P48380 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RFX3P48380 AL161729.1-201ENST00000604104 1402 ntBASIC21.17■□□□□ 0.98
RFX3P48380 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.17■□□□□ 0.98
RFX3P48380 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.17■□□□□ 0.98
RFX3P48380 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.17■□□□□ 0.98
RFX3P48380 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.17■□□□□ 0.98
RFX3P48380 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.17■□□□□ 0.98
RFX3P48380 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RFX3P48380 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX3P48380 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
RFX3P48380 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX3P48380 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX3P48380 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX3P48380 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.16■□□□□ 0.98
RFX3P48380 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RFX3P48380 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RFX3P48380 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RFX3P48380 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RFX3P48380 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX3P48380 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RFX3P48380 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
RFX3P48380 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.15■□□□□ 0.98
RFX3P48380 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.15■□□□□ 0.98
RFX3P48380 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX3P48380 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RFX3P48380 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
RFX3P48380 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RFX3P48380 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RFX3P48380 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RFX3P48380 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.14■□□□□ 0.97
RFX3P48380 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
RFX3P48380 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RFX3P48380 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RFX3P48380 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.13■□□□□ 0.97
RFX3P48380 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 AC021242.3-201ENST00000607598 1377 ntBASIC21.13■□□□□ 0.97
RFX3P48380 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
RFX3P48380 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 AC004448.1-201ENST00000458332 883 ntBASIC21.13■□□□□ 0.97
RFX3P48380 MIR4787-201ENST00000607364 84 ntBASIC21.13■□□□□ 0.97
RFX3P48380 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RFX3P48380 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
RFX3P48380 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RFX3P48380 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RFX3P48380 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
RFX3P48380 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RFX3P48380 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.13■□□□□ 0.97
RFX3P48380 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RFX3P48380 TSPY9P-201ENST00000440215 945 ntBASIC21.12■□□□□ 0.97
RFX3P48380 TSPY11P-201ENST00000442607 1045 ntBASIC21.12■□□□□ 0.97
RFX3P48380 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.12■□□□□ 0.97
RFX3P48380 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.12■□□□□ 0.97
RFX3P48380 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.12■□□□□ 0.97
RFX3P48380 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.12■□□□□ 0.97
RFX3P48380 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
RFX3P48380 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RFX3P48380 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.12■□□□□ 0.97
RFX3P48380 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RFX3P48380 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.12■□□□□ 0.97
RFX3P48380 ALDH1A3-203ENST00000557963 1670 ntBASIC21.12■□□□□ 0.97
RFX3P48380 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.12■□□□□ 0.97
RFX3P48380 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
RFX3P48380 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RFX3P48380 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX3P48380 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX3P48380 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RFX3P48380 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.11■□□□□ 0.97
RFX3P48380 Z92544.1-202ENST00000571933 1220 ntBASIC21.11■□□□□ 0.97
RFX3P48380 SNX5-217ENST00000606557 1087 ntBASIC21.11■□□□□ 0.97
RFX3P48380 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.11■□□□□ 0.97
RFX3P48380 AL035685.1-201ENST00000636663 812 ntBASIC21.11■□□□□ 0.97
RFX3P48380 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RFX3P48380 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.1■□□□□ 0.97
RFX3P48380 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms