Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.93■■□□□ 1.1
HNF4AP41235 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HNF4AP41235 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.93■■□□□ 1.1
HNF4AP41235 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.93■■□□□ 1.1
HNF4AP41235 AC021242.3-201ENST00000607598 1377 ntBASIC21.93■■□□□ 1.1
HNF4AP41235 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
HNF4AP41235 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
HNF4AP41235 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.92■■□□□ 1.1
HNF4AP41235 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 Z92544.1-202ENST00000571933 1220 ntBASIC21.92■■□□□ 1.1
HNF4AP41235 MIR4787-201ENST00000607364 84 ntBASIC21.92■■□□□ 1.1
HNF4AP41235 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.92■■□□□ 1.1
HNF4AP41235 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
HNF4AP41235 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HNF4AP41235 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.91■■□□□ 1.1
HNF4AP41235 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HNF4AP41235 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HNF4AP41235 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.91■■□□□ 1.1
HNF4AP41235 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.91■■□□□ 1.1
HNF4AP41235 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HNF4AP41235 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HNF4AP41235 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HNF4AP41235 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HNF4AP41235 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HNF4AP41235 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HNF4AP41235 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
HNF4AP41235 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HNF4AP41235 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HNF4AP41235 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.89■■□□□ 1.1
HNF4AP41235 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
HNF4AP41235 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.89■■□□□ 1.1
HNF4AP41235 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.89■■□□□ 1.1
HNF4AP41235 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HNF4AP41235 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
HNF4AP41235 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
HNF4AP41235 SNX5-217ENST00000606557 1087 ntBASIC21.89■■□□□ 1.09
HNF4AP41235 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.89■■□□□ 1.09
HNF4AP41235 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.89■■□□□ 1.09
HNF4AP41235 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HNF4AP41235 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
HNF4AP41235 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.89■■□□□ 1.09
HNF4AP41235 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
HNF4AP41235 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
HNF4AP41235 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.89■■□□□ 1.09
HNF4AP41235 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
HNF4AP41235 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
HNF4AP41235 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
HNF4AP41235 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HNF4AP41235 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.88■■□□□ 1.09
HNF4AP41235 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
HNF4AP41235 TSPY9P-201ENST00000440215 945 ntBASIC21.88■■□□□ 1.09
HNF4AP41235 TSPY11P-201ENST00000442607 1045 ntBASIC21.88■■□□□ 1.09
HNF4AP41235 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.88■■□□□ 1.09
HNF4AP41235 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.88■■□□□ 1.09
HNF4AP41235 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.88■■□□□ 1.09
HNF4AP41235 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
HNF4AP41235 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
HNF4AP41235 ANOS2P-203ENST00000472227 1816 ntBASIC21.87■■□□□ 1.09
HNF4AP41235 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.87■■□□□ 1.09
HNF4AP41235 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
HNF4AP41235 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.87■■□□□ 1.09
HNF4AP41235 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.87■■□□□ 1.09
HNF4AP41235 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.87■■□□□ 1.09
HNF4AP41235 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.87■■□□□ 1.09
HNF4AP41235 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HNF4AP41235 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.87■■□□□ 1.09
HNF4AP41235 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.86■■□□□ 1.09
HNF4AP41235 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HNF4AP41235 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
HNF4AP41235 AC092028.1-203ENST00000608262 953 ntBASIC21.86■■□□□ 1.09
HNF4AP41235 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
HNF4AP41235 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.86■■□□□ 1.09
HNF4AP41235 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HNF4AP41235 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HNF4AP41235 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.86■■□□□ 1.09
HNF4AP41235 AC092068.2-201ENST00000590491 1708 ntBASIC21.86■■□□□ 1.09
HNF4AP41235 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HNF4AP41235 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
HNF4AP41235 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HNF4AP41235 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.86■■□□□ 1.09
HNF4AP41235 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HNF4AP41235 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.85■■□□□ 1.09
HNF4AP41235 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.85■■□□□ 1.09
HNF4AP41235 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
HNF4AP41235 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.85■■□□□ 1.09
HNF4AP41235 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HNF4AP41235 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
HNF4AP41235 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms