Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC24.36■■□□□ 1.49
SCN1AP35498 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SCN1AP35498 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SCN1AP35498 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC24.35■■□□□ 1.49
SCN1AP35498 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC24.35■■□□□ 1.49
SCN1AP35498 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SCN1AP35498 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SCN1AP35498 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
SCN1AP35498 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.35■■□□□ 1.49
SCN1AP35498 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SCN1AP35498 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.35■■□□□ 1.49
SCN1AP35498 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
SCN1AP35498 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SCN1AP35498 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SCN1AP35498 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SCN1AP35498 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SCN1AP35498 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.34■■□□□ 1.49
SCN1AP35498 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
SCN1AP35498 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
SCN1AP35498 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
SCN1AP35498 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.34■■□□□ 1.49
SCN1AP35498 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SCN1AP35498 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
SCN1AP35498 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.33■■□□□ 1.49
SCN1AP35498 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SCN1AP35498 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SCN1AP35498 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
SCN1AP35498 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
SCN1AP35498 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
SCN1AP35498 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.32■■□□□ 1.48
SCN1AP35498 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
SCN1AP35498 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
SCN1AP35498 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SCN1AP35498 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.32■■□□□ 1.48
SCN1AP35498 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCN1AP35498 AC096631.2-201ENST00000436136 790 ntBASIC24.31■■□□□ 1.48
SCN1AP35498 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.31■■□□□ 1.48
SCN1AP35498 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SCN1AP35498 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC24.31■■□□□ 1.48
SCN1AP35498 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SCN1AP35498 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC24.3■■□□□ 1.48
SCN1AP35498 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.3■■□□□ 1.48
SCN1AP35498 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCN1AP35498 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCN1AP35498 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.3■■□□□ 1.48
SCN1AP35498 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCN1AP35498 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
SCN1AP35498 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
SCN1AP35498 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.29■■□□□ 1.48
SCN1AP35498 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SCN1AP35498 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
SCN1AP35498 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.29■■□□□ 1.48
SCN1AP35498 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.29■■□□□ 1.48
SCN1AP35498 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SCN1AP35498 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.28■■□□□ 1.48
SCN1AP35498 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.28■■□□□ 1.48
SCN1AP35498 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.28■■□□□ 1.48
SCN1AP35498 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
SCN1AP35498 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SCN1AP35498 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.28■■□□□ 1.48
SCN1AP35498 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC24.28■■□□□ 1.48
SCN1AP35498 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SCN1AP35498 AC019069.1-201ENST00000610008 1333 ntBASIC24.28■■□□□ 1.48
SCN1AP35498 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCN1AP35498 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCN1AP35498 MIR638-201ENST00000385237 100 ntBASIC24.27■■□□□ 1.48
SCN1AP35498 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.27■■□□□ 1.48
SCN1AP35498 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SCN1AP35498 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCN1AP35498 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.27■■□□□ 1.48
SCN1AP35498 SUDS3P1-201ENST00000505831 966 ntBASIC24.27■■□□□ 1.48
SCN1AP35498 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SCN1AP35498 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.27■■□□□ 1.48
SCN1AP35498 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.47
SCN1AP35498 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.26■■□□□ 1.47
SCN1AP35498 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
SCN1AP35498 PTCHD3P2-201ENST00000424937 1205 ntBASIC24.26■■□□□ 1.47
SCN1AP35498 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SCN1AP35498 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC24.26■■□□□ 1.47
SCN1AP35498 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SCN1AP35498 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
SCN1AP35498 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SCN1AP35498 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SCN1AP35498 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SCN1AP35498 AC006455.2-201ENST00000429931 906 ntBASIC24.25■■□□□ 1.47
SCN1AP35498 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.25■■□□□ 1.47
SCN1AP35498 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SCN1AP35498 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
SCN1AP35498 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SCN1AP35498 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC24.24■■□□□ 1.47
SCN1AP35498 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
SCN1AP35498 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SCN1AP35498 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SCN1AP35498 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms