Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 TSPY26P-201ENST00000476365 1326 ntBASIC30.37■■■□□ 2.45
CSB-PGBD3P0DP91 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 KRT18P5-201ENST00000436075 1291 ntBASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CSB-PGBD3P0DP91 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 AL137784.2-201ENST00000607332 1000 ntBASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
CSB-PGBD3P0DP91 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC30.34■■■□□ 2.45
CSB-PGBD3P0DP91 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC30.33■■■□□ 2.45
CSB-PGBD3P0DP91 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
CSB-PGBD3P0DP91 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CSB-PGBD3P0DP91 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC30.33■■■□□ 2.45
CSB-PGBD3P0DP91 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
CSB-PGBD3P0DP91 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CSB-PGBD3P0DP91 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
CSB-PGBD3P0DP91 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
CSB-PGBD3P0DP91 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 SLC47A1P1-202ENST00000449666 945 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L2-201ENST00000561772 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L6-201ENST00000626483 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L1-201ENST00000627662 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L8-201ENST00000629013 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L3-201ENST00000630187 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L7-201ENST00000630678 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 DUX4L5-201ENST00000630834 1275 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 GTSE1-AS1-202ENST00000623117 1518 ntBASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
CSB-PGBD3P0DP91 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.29■■■□□ 2.44
CSB-PGBD3P0DP91 AL121749.1-202ENST00000609313 2153 ntBASIC30.28■■■□□ 2.44
CSB-PGBD3P0DP91 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC30.28■■■□□ 2.44
CSB-PGBD3P0DP91 RAB43-208ENST00000615093 783 ntTSL 5 BASIC30.28■■■□□ 2.44
CSB-PGBD3P0DP91 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC30.27■■■□□ 2.44
CSB-PGBD3P0DP91 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 AC092437.1-201ENST00000624794 1048 ntBASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC30.26■■■□□ 2.43
CSB-PGBD3P0DP91 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
CSB-PGBD3P0DP91 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.25■■■□□ 2.43
CSB-PGBD3P0DP91 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.25■■■□□ 2.43
CSB-PGBD3P0DP91 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CSB-PGBD3P0DP91 AICDA-202ENST00000537228 667 ntTSL 5 BASIC30.25■■■□□ 2.43
CSB-PGBD3P0DP91 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC30.25■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms