Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.33■■□□□ 1.01
MT-ND1P03886 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.33■■□□□ 1.01
MT-ND1P03886 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.33■■□□□ 1.01
MT-ND1P03886 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.33■■□□□ 1
MT-ND1P03886 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
MT-ND1P03886 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
MT-ND1P03886 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
MT-ND1P03886 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND1P03886 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND1P03886 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND1P03886 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND1P03886 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.32■■□□□ 1
MT-ND1P03886 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
MT-ND1P03886 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.32■■□□□ 1
MT-ND1P03886 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.32■■□□□ 1
MT-ND1P03886 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.32■■□□□ 1
MT-ND1P03886 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
MT-ND1P03886 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.31■■□□□ 1
MT-ND1P03886 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
MT-ND1P03886 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND1P03886 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.31■■□□□ 1
MT-ND1P03886 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.31■■□□□ 1
MT-ND1P03886 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.31■■□□□ 1
MT-ND1P03886 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.31■■□□□ 1
MT-ND1P03886 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
MT-ND1P03886 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.3■■□□□ 1
MT-ND1P03886 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.3■■□□□ 1
MT-ND1P03886 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MT-ND1P03886 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
MT-ND1P03886 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MT-ND1P03886 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MT-ND1P03886 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.3■■□□□ 1
MT-ND1P03886 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
MT-ND1P03886 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
MT-ND1P03886 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MT-ND1P03886 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.29■■□□□ 1
MT-ND1P03886 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MT-ND1P03886 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MT-ND1P03886 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MT-ND1P03886 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MT-ND1P03886 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 AC007375.3-201ENST00000600936 2314 ntBASIC21.28■■□□□ 1
MT-ND1P03886 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.28■■□□□ 1
MT-ND1P03886 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MT-ND1P03886 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MT-ND1P03886 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.27■■□□□ 1
MT-ND1P03886 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.27■■□□□ 1
MT-ND1P03886 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
MT-ND1P03886 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
MT-ND1P03886 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.27■■□□□ 1
MT-ND1P03886 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.27■■□□□ 1
MT-ND1P03886 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MT-ND1P03886 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MT-ND1P03886 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.26■□□□□ 0.99
MT-ND1P03886 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.26■□□□□ 0.99
MT-ND1P03886 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.26■□□□□ 0.99
MT-ND1P03886 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
MT-ND1P03886 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
MT-ND1P03886 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MT-ND1P03886 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.26■□□□□ 0.99
MT-ND1P03886 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND1P03886 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND1P03886 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
MT-ND1P03886 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND1P03886 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND1P03886 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.25■□□□□ 0.99
MT-ND1P03886 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
MT-ND1P03886 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND1P03886 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MT-ND1P03886 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MT-ND1P03886 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MT-ND1P03886 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
MT-ND1P03886 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
MT-ND1P03886 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.24■□□□□ 0.99
MT-ND1P03886 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MT-ND1P03886 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MT-ND1P03886 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms