Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC006455.2-201ENST00000429931 906 ntBASIC27.66■■■□□ 2.02
COL1A1P02452 AC091305.1-201ENST00000479476 895 ntBASIC27.66■■■□□ 2.02
COL1A1P02452 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
COL1A1P02452 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL1A1P02452 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC27.65■■■□□ 2.02
COL1A1P02452 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL1A1P02452 EI24-204ENST00000527235 1625 ntTSL 5 BASIC27.65■■■□□ 2.02
COL1A1P02452 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL1A1P02452 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL1A1P02452 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL1A1P02452 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL1A1P02452 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
COL1A1P02452 SERBP1P1-201ENST00000396021 1160 ntBASIC27.64■■■□□ 2.02
COL1A1P02452 AC099791.2-201ENST00000605725 427 ntBASIC27.64■■■□□ 2.02
COL1A1P02452 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
COL1A1P02452 ALDH1A3-203ENST00000557963 1670 ntBASIC27.64■■■□□ 2.02
COL1A1P02452 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
COL1A1P02452 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC27.64■■■□□ 2.02
COL1A1P02452 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
COL1A1P02452 PTCHD3P2-201ENST00000424937 1205 ntBASIC27.64■■■□□ 2.01
COL1A1P02452 MIR6821-201ENST00000617625 74 ntBASIC27.64■■■□□ 2.01
COL1A1P02452 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
COL1A1P02452 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
COL1A1P02452 AC092171.4-201ENST00000609130 632 ntBASIC27.63■■■□□ 2.01
COL1A1P02452 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
COL1A1P02452 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
COL1A1P02452 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC27.62■■■□□ 2.01
COL1A1P02452 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC27.62■■■□□ 2.01
COL1A1P02452 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC27.62■■■□□ 2.01
COL1A1P02452 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC27.62■■■□□ 2.01
COL1A1P02452 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC27.62■■■□□ 2.01
COL1A1P02452 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
COL1A1P02452 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC27.61■■■□□ 2.01
COL1A1P02452 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC27.61■■■□□ 2.01
COL1A1P02452 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC27.61■■■□□ 2.01
COL1A1P02452 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
COL1A1P02452 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
COL1A1P02452 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
COL1A1P02452 MIR4767-201ENST00000582827 78 ntBASIC27.6■■■□□ 2.01
COL1A1P02452 ANKRD20A6P-201ENST00000618763 204 ntBASIC27.6■■■□□ 2.01
COL1A1P02452 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC27.6■■■□□ 2.01
COL1A1P02452 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
COL1A1P02452 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
COL1A1P02452 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC27.6■■■□□ 2.01
COL1A1P02452 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
COL1A1P02452 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC27.59■■■□□ 2.01
COL1A1P02452 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
COL1A1P02452 NKILA-201ENST00000613231 537 ntTSL 4 BASIC27.59■■■□□ 2.01
COL1A1P02452 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
COL1A1P02452 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
COL1A1P02452 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
COL1A1P02452 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
COL1A1P02452 PTMA-205ENST00000410064 814 ntTSL 2 BASIC27.58■■■□□ 2.01
COL1A1P02452 AC097381.1-201ENST00000429019 1296 ntBASIC27.58■■■□□ 2.01
COL1A1P02452 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC27.58■■■□□ 2.01
COL1A1P02452 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC27.58■■■□□ 2.01
COL1A1P02452 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2
COL1A1P02452 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC27.57■■■□□ 2
COL1A1P02452 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC27.57■■■□□ 2
COL1A1P02452 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC27.57■■■□□ 2
COL1A1P02452 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC27.57■■■□□ 2
COL1A1P02452 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC27.57■■■□□ 2
COL1A1P02452 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC27.57■■■□□ 2
COL1A1P02452 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC27.57■■■□□ 2
COL1A1P02452 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
COL1A1P02452 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC27.57■■■□□ 2
COL1A1P02452 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC27.57■■■□□ 2
COL1A1P02452 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC27.57■■■□□ 2
COL1A1P02452 AC027682.1-201ENST00000562846 899 ntBASIC27.57■■■□□ 2
COL1A1P02452 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC27.57■■■□□ 2
COL1A1P02452 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
COL1A1P02452 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
COL1A1P02452 SYT6-210ENST00000641643 1587 ntBASIC27.56■■■□□ 2
COL1A1P02452 RBM38-205ENST00000440234 686 ntTSL 2 BASIC27.56■■■□□ 2
COL1A1P02452 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC27.56■■■□□ 2
COL1A1P02452 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC27.56■■■□□ 2
COL1A1P02452 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
COL1A1P02452 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC27.56■■■□□ 2
COL1A1P02452 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC27.56■■■□□ 2
COL1A1P02452 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
COL1A1P02452 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC27.55■■■□□ 2
COL1A1P02452 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC27.55■■■□□ 2
COL1A1P02452 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.55■■■□□ 2
COL1A1P02452 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL1A1P02452 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL1A1P02452 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
COL1A1P02452 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC27.54■■■□□ 2
COL1A1P02452 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
COL1A1P02452 RASA4CP-201ENST00000424092 1398 ntBASIC27.54■■■□□ 2
COL1A1P02452 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC27.54■■■□□ 2
COL1A1P02452 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
COL1A1P02452 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC27.54■■■□□ 2
COL1A1P02452 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC27.54■■■□□ 2
COL1A1P02452 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
COL1A1P02452 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL1A1P02452 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
COL1A1P02452 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
COL1A1P02452 CA15P2-201ENST00000611168 834 ntBASIC27.53■■■□□ 2
COL1A1P02452 AC011298.3-201ENST00000615796 283 ntBASIC27.53■■■□□ 2
COL1A1P02452 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC27.53■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms