Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LMX1BO60663 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1BO60663 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.91■□□□□ 0.78
LMX1BO60663 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1BO60663 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
LMX1BO60663 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LMX1BO60663 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LMX1BO60663 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1BO60663 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC19.91■□□□□ 0.78
LMX1BO60663 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
LMX1BO60663 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC19.91■□□□□ 0.78
LMX1BO60663 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.91■□□□□ 0.78
LMX1BO60663 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1BO60663 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LMX1BO60663 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.91■□□□□ 0.78
LMX1BO60663 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LMX1BO60663 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1BO60663 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1BO60663 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LMX1BO60663 MIR935-201ENST00000401179 91 ntBASIC19.9■□□□□ 0.78
LMX1BO60663 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.9■□□□□ 0.78
LMX1BO60663 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1BO60663 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1BO60663 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.9■□□□□ 0.78
LMX1BO60663 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LMX1BO60663 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
LMX1BO60663 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.89■□□□□ 0.77
LMX1BO60663 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.89■□□□□ 0.77
LMX1BO60663 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
LMX1BO60663 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
LMX1BO60663 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.89■□□□□ 0.77
LMX1BO60663 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.89■□□□□ 0.77
LMX1BO60663 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LMX1BO60663 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.88■□□□□ 0.77
LMX1BO60663 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
LMX1BO60663 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LMX1BO60663 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.88■□□□□ 0.77
LMX1BO60663 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.88■□□□□ 0.77
LMX1BO60663 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.88■□□□□ 0.77
LMX1BO60663 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
LMX1BO60663 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LMX1BO60663 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.87■□□□□ 0.77
LMX1BO60663 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1BO60663 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.87■□□□□ 0.77
LMX1BO60663 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.87■□□□□ 0.77
LMX1BO60663 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1BO60663 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1BO60663 ANOS2P-203ENST00000472227 1816 ntBASIC19.87■□□□□ 0.77
LMX1BO60663 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1BO60663 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1BO60663 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
LMX1BO60663 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.86■□□□□ 0.77
LMX1BO60663 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
LMX1BO60663 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.86■□□□□ 0.77
LMX1BO60663 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1BO60663 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1BO60663 KRT16P3-201ENST00000439127 1283 ntBASIC19.86■□□□□ 0.77
LMX1BO60663 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
LMX1BO60663 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1BO60663 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1BO60663 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1BO60663 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LMX1BO60663 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.86■□□□□ 0.77
LMX1BO60663 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.85■□□□□ 0.77
LMX1BO60663 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LMX1BO60663 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1BO60663 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.85■□□□□ 0.77
LMX1BO60663 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1BO60663 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LMX1BO60663 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.85■□□□□ 0.77
LMX1BO60663 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1BO60663 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1BO60663 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1BO60663 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.84■□□□□ 0.77
LMX1BO60663 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.84■□□□□ 0.77
LMX1BO60663 KRT18P24-201ENST00000344739 1156 ntBASIC19.84■□□□□ 0.77
LMX1BO60663 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.84■□□□□ 0.77
LMX1BO60663 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1BO60663 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms