Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SSX4O60224 LONRF2P2-201ENST00000439212 571 ntBASIC20.42■□□□□ 0.86
SSX4O60224 AC239859.2-201ENST00000444165 318 ntBASIC20.42■□□□□ 0.86
SSX4O60224 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.42■□□□□ 0.86
SSX4O60224 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.42■□□□□ 0.86
SSX4O60224 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX4O60224 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX4O60224 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SSX4O60224 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.41■□□□□ 0.86
SSX4O60224 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.41■□□□□ 0.86
SSX4O60224 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.41■□□□□ 0.86
SSX4O60224 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SSX4O60224 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SSX4O60224 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SSX4O60224 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SSX4O60224 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.4■□□□□ 0.86
SSX4O60224 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SSX4O60224 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SSX4O60224 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.4■□□□□ 0.86
SSX4O60224 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.4■□□□□ 0.86
SSX4O60224 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
SSX4O60224 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SSX4O60224 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.39■□□□□ 0.85
SSX4O60224 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.39■□□□□ 0.85
SSX4O60224 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.39■□□□□ 0.85
SSX4O60224 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SSX4O60224 SLC6A10P-202ENST00000431994 2058 ntBASIC20.39■□□□□ 0.85
SSX4O60224 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
SSX4O60224 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.38■□□□□ 0.85
SSX4O60224 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SSX4O60224 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SSX4O60224 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SSX4O60224 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SSX4O60224 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SSX4O60224 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SSX4O60224 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.37■□□□□ 0.85
SSX4O60224 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.37■□□□□ 0.85
SSX4O60224 KRT18P10-201ENST00000388836 1287 ntBASIC20.37■□□□□ 0.85
SSX4O60224 AL356441.2-201ENST00000443009 864 ntBASIC20.37■□□□□ 0.85
SSX4O60224 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SSX4O60224 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.37■□□□□ 0.85
SSX4O60224 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SSX4O60224 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.37■□□□□ 0.85
SSX4O60224 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX4O60224 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX4O60224 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SSX4O60224 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX4O60224 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SSX4O60224 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.36■□□□□ 0.85
SSX4O60224 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SSX4O60224 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SSX4O60224 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SSX4O60224 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.35■□□□□ 0.85
SSX4O60224 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.35■□□□□ 0.85
SSX4O60224 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.35■□□□□ 0.85
SSX4O60224 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SSX4O60224 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.35■□□□□ 0.85
SSX4O60224 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.34■□□□□ 0.85
SSX4O60224 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SSX4O60224 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.34■□□□□ 0.85
SSX4O60224 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SSX4O60224 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SSX4O60224 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SSX4O60224 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.33■□□□□ 0.85
SSX4O60224 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.33■□□□□ 0.85
SSX4O60224 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SSX4O60224 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SSX4O60224 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
SSX4O60224 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.33■□□□□ 0.85
SSX4O60224 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SSX4O60224 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.33■□□□□ 0.85
SSX4O60224 Z92544.1-202ENST00000571933 1220 ntBASIC20.33■□□□□ 0.85
SSX4O60224 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms