Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CACNA1AO00555 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CACNA1AO00555 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CACNA1AO00555 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.92■■□□□ 1.1
CACNA1AO00555 AC083906.2-201ENST00000511578 360 ntBASIC21.92■■□□□ 1.1
CACNA1AO00555 SLC7A5P2-201ENST00000553010 536 ntBASIC21.92■■□□□ 1.1
CACNA1AO00555 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.92■■□□□ 1.1
CACNA1AO00555 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CACNA1AO00555 TSPY6P-201ENST00000448518 926 ntBASIC21.91■■□□□ 1.1
CACNA1AO00555 AC098590.1-201ENST00000468126 897 ntBASIC21.91■■□□□ 1.1
CACNA1AO00555 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1AO00555 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1AO00555 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
CACNA1AO00555 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.91■■□□□ 1.1
CACNA1AO00555 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.91■■□□□ 1.1
CACNA1AO00555 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.91■■□□□ 1.1
CACNA1AO00555 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.91■■□□□ 1.1
CACNA1AO00555 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1AO00555 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1AO00555 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.91■■□□□ 1.1
CACNA1AO00555 AC004854.2-201ENST00000608450 1441 ntBASIC21.91■■□□□ 1.1
CACNA1AO00555 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CACNA1AO00555 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1AO00555 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.9■■□□□ 1.1
CACNA1AO00555 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
CACNA1AO00555 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.9■■□□□ 1.1
CACNA1AO00555 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
CACNA1AO00555 GCSHP5-201ENST00000443090 522 ntBASIC21.9■■□□□ 1.1
CACNA1AO00555 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1AO00555 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.9■■□□□ 1.1
CACNA1AO00555 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1AO00555 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CACNA1AO00555 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.89■■□□□ 1.1
CACNA1AO00555 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CACNA1AO00555 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CACNA1AO00555 FAM210CP-201ENST00000445714 574 ntBASIC21.89■■□□□ 1.09
CACNA1AO00555 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1AO00555 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.89■■□□□ 1.09
CACNA1AO00555 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1AO00555 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CACNA1AO00555 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.88■■□□□ 1.09
CACNA1AO00555 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CACNA1AO00555 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CACNA1AO00555 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CACNA1AO00555 KRT18P29-201ENST00000397031 1267 ntBASIC21.88■■□□□ 1.09
CACNA1AO00555 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.88■■□□□ 1.09
CACNA1AO00555 AL596275.1-201ENST00000423464 877 ntBASIC21.88■■□□□ 1.09
CACNA1AO00555 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.88■■□□□ 1.09
CACNA1AO00555 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.88■■□□□ 1.09
CACNA1AO00555 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.88■■□□□ 1.09
CACNA1AO00555 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CACNA1AO00555 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CACNA1AO00555 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CACNA1AO00555 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.87■■□□□ 1.09
CACNA1AO00555 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CACNA1AO00555 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.87■■□□□ 1.09
CACNA1AO00555 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.87■■□□□ 1.09
CACNA1AO00555 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CACNA1AO00555 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
CACNA1AO00555 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CACNA1AO00555 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.86■■□□□ 1.09
CACNA1AO00555 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.86■■□□□ 1.09
CACNA1AO00555 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CACNA1AO00555 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CACNA1AO00555 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CACNA1AO00555 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CACNA1AO00555 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CACNA1AO00555 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CACNA1AO00555 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CACNA1AO00555 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CACNA1AO00555 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.85■■□□□ 1.09
CACNA1AO00555 AC098934.4-201ENST00000564127 592 ntBASIC21.85■■□□□ 1.09
CACNA1AO00555 MFSD11-216ENST00000590393 1141 ntBASIC21.85■■□□□ 1.09
CACNA1AO00555 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CACNA1AO00555 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.85■■□□□ 1.09
CACNA1AO00555 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CACNA1AO00555 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CACNA1AO00555 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.84■■□□□ 1.09
CACNA1AO00555 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CACNA1AO00555 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CACNA1AO00555 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.84■■□□□ 1.09
CACNA1AO00555 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CACNA1AO00555 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.84■■□□□ 1.09
CACNA1AO00555 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CACNA1AO00555 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
CACNA1AO00555 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.84■■□□□ 1.09
CACNA1AO00555 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CACNA1AO00555 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.83■■□□□ 1.09
CACNA1AO00555 SLC29A4P1-201ENST00000398760 971 ntBASIC21.83■■□□□ 1.09
CACNA1AO00555 KRT18P11-201ENST00000435214 1283 ntBASIC21.83■■□□□ 1.09
CACNA1AO00555 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.83■■□□□ 1.09
CACNA1AO00555 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
CACNA1AO00555 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CACNA1AO00555 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.83■■□□□ 1.09
CACNA1AO00555 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.83■■□□□ 1.09
CACNA1AO00555 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.08
CACNA1AO00555 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.82■■□□□ 1.08
CACNA1AO00555 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.82■■□□□ 1.08
CACNA1AO00555 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.82■■□□□ 1.08
CACNA1AO00555 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms