Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
HMGN4O00479 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
HMGN4O00479 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HMGN4O00479 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.16■□□□□ 0.98
HMGN4O00479 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
HMGN4O00479 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.16■□□□□ 0.98
HMGN4O00479 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.15■□□□□ 0.98
HMGN4O00479 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 AC004448.1-201ENST00000458332 883 ntBASIC21.15■□□□□ 0.98
HMGN4O00479 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.15■□□□□ 0.98
HMGN4O00479 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HMGN4O00479 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HMGN4O00479 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HMGN4O00479 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGN4O00479 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGN4O00479 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.14■□□□□ 0.97
HMGN4O00479 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
HMGN4O00479 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGN4O00479 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HMGN4O00479 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HMGN4O00479 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGN4O00479 KRT8P33-201ENST00000508125 1423 ntBASIC21.13■□□□□ 0.97
HMGN4O00479 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HMGN4O00479 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
HMGN4O00479 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGN4O00479 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.13■□□□□ 0.97
HMGN4O00479 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HMGN4O00479 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HMGN4O00479 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.13■□□□□ 0.97
HMGN4O00479 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGN4O00479 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HMGN4O00479 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
HMGN4O00479 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGN4O00479 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGN4O00479 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGN4O00479 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGN4O00479 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
HMGN4O00479 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.12■□□□□ 0.97
HMGN4O00479 AC103724.3-201ENST00000564481 992 ntBASIC21.12■□□□□ 0.97
HMGN4O00479 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
HMGN4O00479 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HMGN4O00479 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HMGN4O00479 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGN4O00479 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
HMGN4O00479 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
HMGN4O00479 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGN4O00479 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGN4O00479 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HMGN4O00479 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HMGN4O00479 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGN4O00479 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.1■□□□□ 0.97
HMGN4O00479 YBX1P4-201ENST00000392794 808 ntBASIC21.1■□□□□ 0.97
HMGN4O00479 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.1■□□□□ 0.97
HMGN4O00479 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HMGN4O00479 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGN4O00479 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGN4O00479 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
HMGN4O00479 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGN4O00479 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGN4O00479 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGN4O00479 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGN4O00479 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGN4O00479 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGN4O00479 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGN4O00479 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGN4O00479 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGN4O00479 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGN4O00479 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGN4O00479 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGN4O00479 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HMGN4O00479 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
HMGN4O00479 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.07■□□□□ 0.96
HMGN4O00479 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
HMGN4O00479 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
HMGN4O00479 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.07■□□□□ 0.96
HMGN4O00479 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
HMGN4O00479 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
HMGN4O00479 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.07■□□□□ 0.96
HMGN4O00479 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGN4O00479 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGN4O00479 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGN4O00479 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms