Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 AC006970.2-201ENST00000450065 779 ntBASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 KRT18P61-201ENST00000585825 1298 ntBASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A6A6NMZ7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.71■□□□□ 0.91
COL6A6A6NMZ7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A6A6NMZ7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A6A6NMZ7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.7■□□□□ 0.9
COL6A6A6NMZ7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A6A6NMZ7 MIR663A-201ENST00000385250 93 ntBASIC20.7■□□□□ 0.9
COL6A6A6NMZ7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.7■□□□□ 0.9
COL6A6A6NMZ7 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 AC097639.1-201ENST00000565519 1891 ntBASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.69■□□□□ 0.9
COL6A6A6NMZ7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL6A6A6NMZ7 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A6A6NMZ7 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A6A6NMZ7 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL6A6A6NMZ7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.68■□□□□ 0.9
COL6A6A6NMZ7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A6A6NMZ7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 GPX1P1-201ENST00000388829 606 ntBASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.67■□□□□ 0.9
COL6A6A6NMZ7 AC131274.2-201ENST00000580697 1507 ntBASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL6A6A6NMZ7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 AC009086.3-201ENST00000623486 1008 ntBASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A6A6NMZ7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A6A6NMZ7 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A6A6NMZ7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
COL6A6A6NMZ7 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A6A6NMZ7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A6A6NMZ7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms