Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
SMIM28A0A1B0GU29 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMIM28A0A1B0GU29 AL136162.1-201ENST00000607711 1078 ntBASIC24.5■■□□□ 1.51
SMIM28A0A1B0GU29 AC005837.3-201ENST00000612163 286 ntBASIC24.5■■□□□ 1.51
SMIM28A0A1B0GU29 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.5■■□□□ 1.51
SMIM28A0A1B0GU29 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 AC099791.2-201ENST00000605725 427 ntBASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 AL139125.2-201ENST00000623134 1869 ntBASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 LINC01124-201ENST00000409786 2117 ntBASIC24.49■■□□□ 1.51
SMIM28A0A1B0GU29 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.48■■□□□ 1.51
SMIM28A0A1B0GU29 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 DUX4L19-201ENST00000557448 1267 ntBASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 AC092171.4-201ENST00000609130 632 ntBASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 LINC00543-201ENST00000567234 1845 ntBASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
SMIM28A0A1B0GU29 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 AC135279.3-201ENST00000610945 1311 ntBASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 AC024257.2-201ENST00000549699 147 ntBASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 AC141586.4-201ENST00000624558 1573 ntBASIC24.46■■□□□ 1.51
SMIM28A0A1B0GU29 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC24.45■■□□□ 1.51
SMIM28A0A1B0GU29 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SMIM28A0A1B0GU29 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SMIM28A0A1B0GU29 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SMIM28A0A1B0GU29 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC24.45■■□□□ 1.5
SMIM28A0A1B0GU29 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.45■■□□□ 1.5
SMIM28A0A1B0GU29 NKILA-201ENST00000613231 537 ntTSL 4 BASIC24.45■■□□□ 1.5
SMIM28A0A1B0GU29 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 SYT6-210ENST00000641643 1587 ntBASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
SMIM28A0A1B0GU29 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 AC241377.3-202ENST00000626088 1088 ntBASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 AC241585.3-202ENST00000628937 1088 ntBASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 AC245100.8-202ENST00000629247 1058 ntBASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
SMIM28A0A1B0GU29 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 SERBP1P1-201ENST00000396021 1160 ntBASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SMIM28A0A1B0GU29 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 AL031432.3-201ENST00000607698 485 ntBASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
SMIM28A0A1B0GU29 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SMIM28A0A1B0GU29 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms