Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 RNVU1-8-201ENST00000364272 125 ntBASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 HERC2P11-201ENST00000562845 725 ntBASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 AC100756.2-201ENST00000569537 736 ntBASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 MIR5001-201ENST00000580185 100 ntBASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC27.17■■□□□ 1.94
SHROOM4Q9ULL8 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 COCH-203ENST00000460581 2688 ntTSL 2 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 BRD7P5-201ENST00000299197 1822 ntBASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SHROOM4Q9ULL8 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 HLA-DPA2-205ENST00000433582 733 ntBASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 AC063952.3-201ENST00000467756 308 ntBASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 MYADML-201ENST00000474610 2147 ntBASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
SHROOM4Q9ULL8 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 TNRC18P2-201ENST00000417666 2714 ntBASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 CTSL-202ENST00000342020 933 ntTSL 2 BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 AC073869.2-201ENST00000417338 1026 ntBASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
SHROOM4Q9ULL8 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SHROOM4Q9ULL8 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SHROOM4Q9ULL8 AC011498.7-201ENST00000624986 2027 ntBASIC27.14■■□□□ 1.93
SHROOM4Q9ULL8 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
SHROOM4Q9ULL8 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.93
SHROOM4Q9ULL8 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.93
SHROOM4Q9ULL8 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
SHROOM4Q9ULL8 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC27.13■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms