Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.47□□□□□ -0.09
TRIM39Q9HCM9 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 NKAIN1P1-201ENST00000435754 582 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 VDAC1P1-201ENST00000439229 848 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 HLA-J-204ENST00000495278 958 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 MIR3615-201ENST00000581999 87 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AC008805.1-201ENST00000590892 364 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AL451050.2-201ENST00000606967 682 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AC244093.1-201ENST00000610837 814 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 MIR6787-201ENST00000616675 61 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 MBLAC2-202ENST00000514906 1936 ntBASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
TRIM39Q9HCM9 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 AC144522.1-201ENST00000625111 1658 ntBASIC14.46□□□□□ -0.1
TRIM39Q9HCM9 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC005912.2-201ENST00000619492 2400 ntBASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC027237.1-201ENST00000560942 655 ntBASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC090164.2-201ENST00000611487 516 ntBASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 MIR6074-201ENST00000612054 107 ntBASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 AC140479.7-201ENST00000636301 2332 ntBASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
TRIM39Q9HCM9 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms