Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 KRT18P9-201ENST00000604826 1300 ntBASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CHMP4AQ9BY43 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC026320.2-201ENST00000434379 478 ntBASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC114947.1-202ENST00000514136 344 ntBASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 PHBP15-201ENST00000574228 665 ntBASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 NAT9-211ENST00000580632 799 ntTSL 3 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC006453.1-201ENST00000636037 1257 ntBASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 AC232323.1-201ENST00000540724 2099 ntBASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CHMP4AQ9BY43 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.54
CHMP4AQ9BY43 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 RNA5SP359-201ENST00000364838 113 ntBASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 AL512310.5-201ENST00000551999 515 ntBASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4AQ9BY43 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 USP17L6P-201ENST00000382470 1197 ntBASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 CHMP4BP1-201ENST00000556017 588 ntBASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 RN7SL574P-201ENST00000581512 297 ntBASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 AC097724.1-201ENST00000609581 426 ntBASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4AQ9BY43 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms