Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
COL12A1Q99715 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
COL12A1Q99715 C6orf203-201ENST00000311381 900 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 POP5-201ENST00000341039 913 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 OR52X1P-201ENST00000446117 914 ntBASIC12.33□□□□□ -0.44
COL12A1Q99715 CETN3-205ENST00000522842 664 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 AC139100.2-201ENST00000616901 662 ntBASIC12.33□□□□□ -0.44
COL12A1Q99715 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC12.33□□□□□ -0.44
COL12A1Q99715 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 AC002350.2-201ENST00000623894 1828 ntBASIC12.33□□□□□ -0.44
COL12A1Q99715 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC12.33□□□□□ -0.44
COL12A1Q99715 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 AC127002.1-201ENST00000619123 455 ntBASIC12.33□□□□□ -0.44
COL12A1Q99715 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC12.33□□□□□ -0.44
COL12A1Q99715 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.33□□□□□ -0.44
COL12A1Q99715 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
COL12A1Q99715 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC12.32□□□□□ -0.44
COL12A1Q99715 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC092573.1-201ENST00000433054 884 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 OR4C14P-201ENST00000440929 923 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 PSME3-213ENST00000592169 826 ntTSL 3 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC12.32□□□□□ -0.44
COL12A1Q99715 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC092135.3-201ENST00000624151 1846 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
COL12A1Q99715 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 NDUFB10P1-201ENST00000567319 521 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 DRG2-220ENST00000583355 891 ntTSL 3 BASIC12.32□□□□□ -0.44
COL12A1Q99715 TYMSP2-201ENST00000589501 424 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 RPS5-205ENST00000598495 800 ntTSL 3 BASIC12.32□□□□□ -0.44
COL12A1Q99715 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC087481.3-201ENST00000602886 1894 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC12.32□□□□□ -0.44
COL12A1Q99715 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.32□□□□□ -0.44
COL12A1Q99715 AC023024.2-201ENST00000623561 1993 ntBASIC12.32□□□□□ -0.44
COL12A1Q99715 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
COL12A1Q99715 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.31□□□□□ -0.44
COL12A1Q99715 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
COL12A1Q99715 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC12.31□□□□□ -0.44
COL12A1Q99715 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
COL12A1Q99715 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms