Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 FAM21EP-201ENST00000417804 985 ntBASIC17.26■□□□□ 0.35
SNED1Q8TER0 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 BRI3P1-201ENST00000440440 378 ntBASIC17.26■□□□□ 0.35
SNED1Q8TER0 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 RN7SL288P-201ENST00000490496 291 ntBASIC17.26■□□□□ 0.35
SNED1Q8TER0 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.26■□□□□ 0.35
SNED1Q8TER0 AC018846.1-201ENST00000568231 183 ntBASIC17.26■□□□□ 0.35
SNED1Q8TER0 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SNED1Q8TER0 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.26■□□□□ 0.35
SNED1Q8TER0 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AL080243.1-201ENST00000423293 1060 ntBASIC17.25■□□□□ 0.35
SNED1Q8TER0 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 ZNF877P-201ENST00000437614 612 ntBASIC17.25■□□□□ 0.35
SNED1Q8TER0 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AL590235.1-201ENST00000564650 861 ntBASIC17.25■□□□□ 0.35
SNED1Q8TER0 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 AC232323.1-201ENST00000540724 2099 ntBASIC17.25■□□□□ 0.35
SNED1Q8TER0 OR6D1P-203ENST00000641209 4860 ntBASIC17.25■□□□□ 0.35
SNED1Q8TER0 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SNED1Q8TER0 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SNED1Q8TER0 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SNED1Q8TER0 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.24■□□□□ 0.35
SNED1Q8TER0 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SNED1Q8TER0 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNED1Q8TER0 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNED1Q8TER0 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SNED1Q8TER0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SNED1Q8TER0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNED1Q8TER0 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SNED1Q8TER0 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms