Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
LYSMD4Q5XG99 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
LYSMD4Q5XG99 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 AC126755.1-201ENST00000525846 6405 ntBASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
LYSMD4Q5XG99 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AC138035.3-201ENST00000622706 2791 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 MIR1301-201ENST00000408518 82 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 LINC00265-2P-201ENST00000413372 782 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AC063952.3-201ENST00000467756 308 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 IGHV1-12-201ENST00000518307 205 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 TREHP1-201ENST00000531328 465 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 SORD2P-201ENST00000558556 1069 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 TRMT112P3-201ENST00000580149 358 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AC006548.2-201ENST00000605217 529 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 AC008972.2-201ENST00000606587 494 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 FUCA1P1-201ENST00000374476 1351 ntBASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.08□□□□□ -0.16
LYSMD4Q5XG99 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 AL161932.2-201ENST00000435436 679 ntBASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 RN7SL788P-201ENST00000460504 316 ntBASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 KLF17P1-201ENST00000547105 1126 ntBASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 USB1-205ENST00000561743 1135 ntTSL 3 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 CCT8L1P-201ENST00000465400 1674 ntBASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.07□□□□□ -0.16
LYSMD4Q5XG99 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms