Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC12.17□□□□□ -0.46
HOXA1P49639 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 ODF2-213ENST00000448249 2059 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HOXA1P49639 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 TPT1P11-201ENST00000458482 498 ntBASIC12.17□□□□□ -0.46
HOXA1P49639 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.17□□□□□ -0.46
HOXA1P49639 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 AC010336.2-201ENST00000564226 506 ntBASIC12.17□□□□□ -0.46
HOXA1P49639 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC12.17□□□□□ -0.46
HOXA1P49639 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA1P49639 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.17□□□□□ -0.46
HOXA1P49639 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA1P49639 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 TRPC7-201ENST00000352189 2241 ntTSL 5 BASIC12.17□□□□□ -0.46
HOXA1P49639 IL1RAP-211ENST00000439062 2244 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HOXA1P49639 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
HOXA1P49639 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
HOXA1P49639 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 AL360270.3-201ENST00000609118 1348 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 GOLGA8VP-201ENST00000559009 1798 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HOXA1P49639 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 CNN2P2-201ENST00000443536 909 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 CNN2P3-201ENST00000450201 906 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 AC125807.1-201ENST00000483097 614 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.16□□□□□ -0.46
HOXA1P49639 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 AC069262.1-201ENST00000539058 672 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.16□□□□□ -0.46
HOXA1P49639 AL512356.2-201ENST00000546955 174 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HOXA1P49639 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 AL138828.2-201ENST00000615812 383 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 AL136317.3-201ENST00000618497 906 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 AC073592.8-201ENST00000624126 511 ntBASIC12.16□□□□□ -0.46
HOXA1P49639 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HOXA1P49639 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.16□□□□□ -0.46
HOXA1P49639 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HOXA1P49639 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms