Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12□□□□□ -0.49
CDX1P47902 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12□□□□□ -0.49
CDX1P47902 APBA2-212ENST00000561069 3138 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CDX1P47902 AC073548.1-201ENST00000624088 1882 ntBASIC12□□□□□ -0.49
CDX1P47902 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC12□□□□□ -0.49
CDX1P47902 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 AC068760.1-201ENST00000493579 1953 ntBASIC11.99□□□□□ -0.49
CDX1P47902 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 MGST3-203ENST00000367885 680 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
CDX1P47902 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
CDX1P47902 HIST1H2BPS3-201ENST00000419683 341 ntBASIC11.99□□□□□ -0.49
CDX1P47902 AC112492.5-201ENST00000421897 457 ntBASIC11.99□□□□□ -0.49
CDX1P47902 TMEM14DP-201ENST00000422205 345 ntBASIC11.99□□□□□ -0.49
CDX1P47902 NUS1P3-201ENST00000423502 862 ntBASIC11.99□□□□□ -0.49
CDX1P47902 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 AC234783.1-201ENST00000441761 496 ntBASIC11.99□□□□□ -0.49
CDX1P47902 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 AL355864.2-201ENST00000447420 863 ntBASIC11.99□□□□□ -0.49
CDX1P47902 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.99□□□□□ -0.49
CDX1P47902 USP32P1-208ENST00000506594 1164 ntBASIC11.99□□□□□ -0.49
CDX1P47902 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC11.99□□□□□ -0.49
CDX1P47902 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC11.99□□□□□ -0.49
CDX1P47902 IGHV3-71-201ENST00000523324 359 ntBASIC11.99□□□□□ -0.49
CDX1P47902 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
CDX1P47902 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 IFT20-208ENST00000578985 831 ntTSL 3 BASIC11.99□□□□□ -0.49
CDX1P47902 CLUHP6-201ENST00000580789 941 ntBASIC11.99□□□□□ -0.49
CDX1P47902 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 RPSAP52-203ENST00000622976 1023 ntBASIC11.99□□□□□ -0.49
CDX1P47902 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 AC004899.2-201ENST00000622993 3860 ntBASIC11.99□□□□□ -0.49
CDX1P47902 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
CDX1P47902 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.99□□□□□ -0.49
CDX1P47902 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CDX1P47902 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CDX1P47902 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
CDX1P47902 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC11.98□□□□□ -0.49
CDX1P47902 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CDX1P47902 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
CDX1P47902 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
CDX1P47902 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms