Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.06■□□□□ 0
PTPN9P43378 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PTPN9P43378 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC15.05■□□□□ 0
PTPN9P43378 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC15.05■□□□□ 0
PTPN9P43378 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.05■□□□□ 0
PTPN9P43378 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ 0
PTPN9P43378 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
PTPN9P43378 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.05■□□□□ 0
PTPN9P43378 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.05■□□□□ 0
PTPN9P43378 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.05■□□□□ -0
PTPN9P43378 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.05■□□□□ -0
PTPN9P43378 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.05■□□□□ -0
PTPN9P43378 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC15.05■□□□□ -0
PTPN9P43378 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 AC140658.4-201ENST00000561990 352 ntBASIC15.05■□□□□ -0
PTPN9P43378 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 SNORD3B-2-202ENST00000571722 791 ntBASIC15.05■□□□□ -0
PTPN9P43378 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC15.05■□□□□ -0
PTPN9P43378 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC15.05■□□□□ -0
PTPN9P43378 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC15.05■□□□□ -0
PTPN9P43378 AL136295.7-201ENST00000619226 1200 ntBASIC15.05■□□□□ -0
PTPN9P43378 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PTPN9P43378 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC15.05■□□□□ -0
PTPN9P43378 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
PTPN9P43378 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.05■□□□□ -0
PTPN9P43378 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.05■□□□□ -0
PTPN9P43378 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN9P43378 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 CCT8L1P-201ENST00000465400 1674 ntBASIC15.04■□□□□ -0
PTPN9P43378 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.04■□□□□ -0
PTPN9P43378 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC15.04■□□□□ -0
PTPN9P43378 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN9P43378 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.04■□□□□ -0
PTPN9P43378 BRWD1P1-201ENST00000401091 371 ntBASIC15.04■□□□□ -0
PTPN9P43378 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.04■□□□□ -0
PTPN9P43378 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 AC104073.2-201ENST00000453737 312 ntBASIC15.04■□□□□ -0
PTPN9P43378 PFN1P12-201ENST00000455938 534 ntBASIC15.04■□□□□ -0
PTPN9P43378 TMEM198B-204ENST00000484016 896 ntBASIC15.04■□□□□ -0
PTPN9P43378 AC106794.1-201ENST00000506935 792 ntBASIC15.04■□□□□ -0
PTPN9P43378 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.04■□□□□ -0
PTPN9P43378 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC15.04■□□□□ -0
PTPN9P43378 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
PTPN9P43378 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.04■□□□□ -0
PTPN9P43378 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC15.04■□□□□ -0
PTPN9P43378 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.04■□□□□ -0
PTPN9P43378 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.04■□□□□ -0
PTPN9P43378 AL132994.2-201ENST00000603120 687 ntBASIC15.04■□□□□ -0
PTPN9P43378 AC092299.1-201ENST00000632679 757 ntBASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms