Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
COL5A1P20908 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 AC097359.2-201ENST00000604992 2389 ntBASIC13.55□□□□□ -0.24
COL5A1P20908 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.55□□□□□ -0.24
COL5A1P20908 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL5A1P20908 AP000354.1-201ENST00000396982 456 ntBASIC13.55□□□□□ -0.24
COL5A1P20908 AC004522.1-201ENST00000419978 654 ntBASIC13.55□□□□□ -0.24
COL5A1P20908 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 HNRNPA1P2-207ENST00000432375 960 ntBASIC13.55□□□□□ -0.24
COL5A1P20908 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC13.55□□□□□ -0.24
COL5A1P20908 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL5A1P20908 GOLGA2P8-201ENST00000505201 779 ntBASIC13.55□□□□□ -0.24
COL5A1P20908 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC13.55□□□□□ -0.24
COL5A1P20908 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
COL5A1P20908 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.55□□□□□ -0.24
COL5A1P20908 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC13.55□□□□□ -0.24
COL5A1P20908 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
COL5A1P20908 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.55□□□□□ -0.24
COL5A1P20908 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
COL5A1P20908 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC13.54□□□□□ -0.24
COL5A1P20908 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
COL5A1P20908 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.54□□□□□ -0.24
COL5A1P20908 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
COL5A1P20908 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
COL5A1P20908 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
COL5A1P20908 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.54□□□□□ -0.24
COL5A1P20908 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 GOLGA6L16P-201ENST00000441780 1299 ntBASIC13.54□□□□□ -0.24
COL5A1P20908 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC13.54□□□□□ -0.24
COL5A1P20908 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC13.54□□□□□ -0.24
COL5A1P20908 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 COQ10BP2-201ENST00000513804 724 ntBASIC13.54□□□□□ -0.24
COL5A1P20908 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC13.54□□□□□ -0.24
COL5A1P20908 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.54□□□□□ -0.24
COL5A1P20908 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC13.54□□□□□ -0.24
COL5A1P20908 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC13.54□□□□□ -0.24
COL5A1P20908 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC13.54□□□□□ -0.24
COL5A1P20908 NAV1-210ENST00000593583 726 ntBASIC13.54□□□□□ -0.24
COL5A1P20908 AC106881.1-201ENST00000605849 3329 ntBASIC13.54□□□□□ -0.24
COL5A1P20908 PTPN20CP-201ENST00000614090 920 ntBASIC13.54□□□□□ -0.24
COL5A1P20908 MIR6816-201ENST00000620368 66 ntBASIC13.54□□□□□ -0.24
COL5A1P20908 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.54□□□□□ -0.24
COL5A1P20908 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
COL5A1P20908 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL5A1P20908 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 AC092115.1-201ENST00000566277 1402 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL5A1P20908 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.53□□□□□ -0.24
COL5A1P20908 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC13.53□□□□□ -0.24
COL5A1P20908 AC100858.1-201ENST00000514059 1228 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC13.53□□□□□ -0.24
COL5A1P20908 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC13.53□□□□□ -0.24
COL5A1P20908 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 MIR5001-201ENST00000580185 100 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL5A1P20908 AL049840.2-201ENST00000602722 535 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC13.53□□□□□ -0.24
COL5A1P20908 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
COL5A1P20908 AC233280.19-201ENST00000633223 136 ntBASIC13.53□□□□□ -0.24
COL5A1P20908 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
COL5A1P20908 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms