Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC14.54□□□□□ -0.08
VCANP13611 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.54□□□□□ -0.08
VCANP13611 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 NALT1-202ENST00000450304 437 ntTSL 3 BASIC14.54□□□□□ -0.08
VCANP13611 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.54□□□□□ -0.08
VCANP13611 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC14.54□□□□□ -0.08
VCANP13611 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.54□□□□□ -0.08
VCANP13611 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.54□□□□□ -0.08
VCANP13611 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.54□□□□□ -0.08
VCANP13611 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 RBP4-203ENST00000371469 814 ntTSL 5 BASIC14.54□□□□□ -0.08
VCANP13611 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC14.54□□□□□ -0.08
VCANP13611 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC14.54□□□□□ -0.08
VCANP13611 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC14.54□□□□□ -0.08
VCANP13611 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VCANP13611 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VCANP13611 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 RN7SL832P-201ENST00000607781 1756 ntBASIC14.53□□□□□ -0.08
VCANP13611 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 AC093627.3-201ENST00000467050 574 ntTSL 4 BASIC14.53□□□□□ -0.08
VCANP13611 RPSAP70-201ENST00000504462 864 ntBASIC14.53□□□□□ -0.08
VCANP13611 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.53□□□□□ -0.08
VCANP13611 AC009132.1-201ENST00000565194 320 ntBASIC14.53□□□□□ -0.08
VCANP13611 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.53□□□□□ -0.08
VCANP13611 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
VCANP13611 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 SRSF9P1-201ENST00000399149 530 ntBASIC14.53□□□□□ -0.08
VCANP13611 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC14.53□□□□□ -0.08
VCANP13611 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 FXYD3-210ENST00000604621 548 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 AC009812.1-201ENST00000605948 1059 ntBASIC14.53□□□□□ -0.08
VCANP13611 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VCANP13611 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
VCANP13611 AP001505.1-201ENST00000569966 824 ntBASIC14.53□□□□□ -0.08
VCANP13611 RN7SL322P-201ENST00000583519 299 ntBASIC14.53□□□□□ -0.08
VCANP13611 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 COG6-212ENST00000630730 186 ntTSL 5 BASIC14.53□□□□□ -0.08
VCANP13611 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.52□□□□□ -0.08
VCANP13611 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.52□□□□□ -0.08
VCANP13611 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
VCANP13611 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VCANP13611 RPSAP6-201ENST00000417882 882 ntBASIC14.52□□□□□ -0.08
VCANP13611 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms