Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TPM1P09493 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TPM1P09493 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.11■□□□□ 0.17
TPM1P09493 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 KLF2P2-201ENST00000416807 1039 ntBASIC16.11■□□□□ 0.17
TPM1P09493 TSSK5P-201ENST00000423978 907 ntBASIC16.11■□□□□ 0.17
TPM1P09493 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.11■□□□□ 0.17
TPM1P09493 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM1P09493 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.11■□□□□ 0.17
TPM1P09493 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
TPM1P09493 BRI3BPP1-201ENST00000594224 787 ntBASIC16.11■□□□□ 0.17
TPM1P09493 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.11■□□□□ 0.17
TPM1P09493 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 AL139385.1-201ENST00000611744 3272 ntBASIC16.11■□□□□ 0.17
TPM1P09493 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 AC111170.3-201ENST00000624282 2464 ntBASIC16.11■□□□□ 0.17
TPM1P09493 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
TPM1P09493 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TPM1P09493 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM1P09493 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TPM1P09493 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TPM1P09493 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM1P09493 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM1P09493 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 DNAJB3-202ENST00000449667 1266 ntBASIC16.1■□□□□ 0.17
TPM1P09493 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.1■□□□□ 0.17
TPM1P09493 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TPM1P09493 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.1■□□□□ 0.17
TPM1P09493 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TPM1P09493 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
TPM1P09493 AC004899.2-201ENST00000622993 3860 ntBASIC16.1■□□□□ 0.17
TPM1P09493 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TPM1P09493 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 CES1P1-201ENST00000421606 1704 ntBASIC16.1■□□□□ 0.17
TPM1P09493 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM1P09493 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
TPM1P09493 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
TPM1P09493 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM1P09493 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM1P09493 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
TPM1P09493 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.09■□□□□ 0.17
TPM1P09493 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.09■□□□□ 0.17
TPM1P09493 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.09■□□□□ 0.17
TPM1P09493 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
TPM1P09493 DOC2GP-202ENST00000514950 1163 ntBASIC16.09■□□□□ 0.17
TPM1P09493 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms