Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 RPL13-201ENST00000311528 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
AP1S3Q96PC3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 DUSP16-202ENST00000298573 5253 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 AP001267.2-201ENST00000532619 2086 ntBASIC11.09□□□□□ -0.63
AP1S3Q96PC3 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 LILRP1-201ENST00000444199 1370 ntBASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 AC005237.2-201ENST00000434368 219 ntBASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 BANF1P1-201ENST00000553684 263 ntBASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TBCB-211ENST00000589996 724 ntTSL 3 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 AC007967.4-201ENST00000614700 386 ntBASIC11.09□□□□□ -0.63
AP1S3Q96PC3 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TMEM132D-201ENST00000389441 5305 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 MAML2-201ENST00000524717 7106 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 LPGAT1-202ENST00000366997 7782 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
AP1S3Q96PC3 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
AP1S3Q96PC3 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.63
AP1S3Q96PC3 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 OTOG-201ENST00000342528 4992 ntTSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 PNPLA7-201ENST00000277531 4581 ntAPPRIS P3 TSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 CYP2AB1P-202ENST00000454440 1456 ntBASIC11.08□□□□□ -0.64
AP1S3Q96PC3 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AC015922.1-201ENST00000421102 1152 ntBASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AL590627.1-203ENST00000421194 1026 ntBASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
AP1S3Q96PC3 AC040169.1-201ENST00000565382 521 ntBASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms