Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP4CQ96CF2 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 FNTAP2-201ENST00000430308 634 ntBASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AP001258.2-201ENST00000529891 490 ntBASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 MIR4783-201ENST00000580343 82 ntBASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AC007663.3-201ENST00000609632 465 ntBASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AC244157.2-201ENST00000616239 1006 ntBASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 AC090505.1-201ENST00000430515 1834 ntBASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CHMP4CQ96CF2 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 ST20-AS1-201ENST00000560255 4223 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 CICP20-201ENST00000443330 2801 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AP000593.2-201ENST00000542775 1433 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 MIR663B-201ENST00000408361 115 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AC079178.1-201ENST00000420915 656 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AC021723.1-201ENST00000486306 515 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AC044849.1-201ENST00000519737 1188 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 ACTG1P17-201ENST00000558391 1119 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 AL359881.3-201ENST00000602640 1721 ntBASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 PID1-202ENST00000392054 2745 ntTSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CHMP4CQ96CF2 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
CHMP4CQ96CF2 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.39■□□□□ 0.38
CHMP4CQ96CF2 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHMP4CQ96CF2 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms